| Supplementary information | ||||||
| RECODE 122 entries in FSDB were extracted from 185 entries in the RECODE database (97 -1 frameshift data and 88 +1 frameshift data). 63 of the 185 entries were excluded for a variety of reasons. First, some RECODE entries have no GenBank accession number and so no sequence data associated with them. Second, the same GenBank accession number may appear in more than one RECODE entry. For example, in +1 frameshifting, Botryotinia fuckeliana has the same accession number (AF291578.1) as Schizosaccharomyces japonicus. Third, some RECODE entries are redundant with the PseudoBase data. Fourth, some slippery sequences are too simple and have too many matches in a sequence. For example, the slippery sequence of the argI gene in Escherichia coli is UUUC, and there are too many UUUC occurrences in Escherichia coli. PseudoBase Twenty two of the entries in FSDB were obtained from 22 entries in the PseudoBase database. Equine arteritis virus and infectious bronchitis virus were excluded since they are redundant with other sources. FSFinder Every entry in FSDB was added to FSDB by the following procedure.
| ||||||
| Database entry | ||||||
|
The FSDB database can be searched by a combination of five selections: data type, frameshift type, organism type, slippery sequence, and key word. Data type is either experimental or predicted. Experimental data are experimentally verified data obtained from PseudoBase and RECODE. Predicted data are: (1) data not experimentally verified, obtained from RECODE and (2) data predicted computationally by FSFinder and then confirmed by GenBank annotations.
FSDB provides information on both -1 and +1 frameshifts. We have simplified the organism type to three categories: viruses, prokaryotes and eukaryotes. Bacteriophages and prophages are included in viruses. Both bacteria and bacterial insertion sequences are included in prokaryota, and eukaryotic transposable elements are included in eukaryota. We provide a detailed classification of organisms based on the GenBank definition. For example, the abbreviated words BCT, PHG and VRL represent bacterial, bacteriophage and virus nucleotide sequences, respectively. | ||||||
| Current entries (listed in the alphabetical order of organism names) | |
| FSID | Definition |
| PM1V0018 | Acyrthosiphon pisum virus, complete genome. 10035 bp ss-RNA linear VRL 30-MAR-2006 |
| PP1P0043 | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. 2841490 bp DNA circular... |
| PP1P0063 | Anaplasma phagocytophilum HZ, complete genome. 1471282 bp DNA circular BCT 30-MAR-2006 |
| PP1E0004 | Aspergillus nidulans ornithine decarboxylase antizyme (antizyme) mRNA, complete cds. 863 bp mRNA... |
| EM1V0032 | Avian infectious bronchitis virus pol protein, spike protein, small virion-associated protein,... |
| PM1V0019 | Avian leukosis virus - RSA, complete genome. 7286 bp ss-RNA linear VRL 30-MAR-2006 |
| PP1P0005 | Bacillus anthracis str. Ames section 17 of 18 of the complete |
| PP1P0081 | Bacillus cereus ATCC 10987, complete genome. 5224283 bp DNA circular BCT 17-JAN-2006 |
| PP1P0029 | Bacillus halodurans C-125 DNA, complete genome, section 13/14. 303650 bp DNA linear BCT 14-JUL-2004 |
| PP1P0079 | Bacillus licheniformis ATCC 14580, complete genome. 4222334 bp DNA circular BCT 18-JAN-2006 |
| PP1P0006 | Bacillus subtilis 300-304 degree genomic sequence. 47739 bp DNA linear BCT 23-MAY-2000 |
| PM1V0013 | Bacteriophage K139, complete genome. 33106 bp DNA linear PHG 30-MAR-2006 |
| PM1V0071 | Bacteriophage L-413C, complete genome. 30728 bp DNA linear PHG 30-MAR-2006 |
| PM1V0073 | Bacteriophage N15 virion, complete genome. 46375 bp DNA linear PHG 30-MAR-2006 |
| PM1V0017 | Bacteriophage phi CTX, complete genome. 35580 bp DNA circular PHG 30-MAR-2006 |
| PM1V0075 | Bacteriophage phiKO2 virion, complete genome. 51601 bp DNA linear PHG 30-MAR-2006 |
| PM1V0065 | Bacteriophage phiYeO3-12, complete genome. 39600 bp DNA linear PHG 30-MAR-2006 |
| EP1V0001 | Bacteriophage PSA complete genome. 37618 bp DNA linear PHG 24-SEP-2003 |
| PM1V0002 | Bacteriophage PSP3, complete genome. 30636 bp DNA linear PHG 30-MAR-2006 |
| PM1V0063 | Bacteriophage T3, complete genome. 38208 bp DNA linear PHG 30-MAR-2006 |
| PM1V0070 | Bacteriophage WPhi, complete genome. 32684 bp DNA linear PHG 30-MAR-2006 |
| PM1V0020 | Barley yellow dwarf virus - GAV, complete genome. 5685 bp ss-RNA linear VRL 30-MAR-2006 |
| PM1V0021 | Barley yellow dwarf virus - MAV, complete genome. 5273 bp ss-RNA linear VRL 30-MAR-2006 |
| EM1V0020 | Barley yellow dwarf virus - PAV genomic RNA. 5677 bp RNA linear VRL 04-APR-2002 |
| PM1V0022 | Barley yellow dwarf virus-PAS, complete genome. 5695 bp ss-RNA linear VRL 30-MAR-2006 |
| EM1V0001 | Beet chlorosis virus isolate BChV-CR, complete genome. 5742 bp RNA linear VRL 25-APR-2002 |
| EM1V0002 | Berne virus mRNA for polymerase. 7920 bp RNA linear VRL 10-FEB-1999 |
| PP1E0001 | Bombyx mori ornithine decarboxylase antizyme (antizyme) mRNA, complete cds. 858 bp mRNA linear INV... |
| PM1E0012 | Bombyx mori retrotransposon mag DNA. 4564 bp DNA linear INV 02-APR-1990 |
| PP1P0034 | Borrelia afzelii PKo, complete genome. 905394 bp DNA linear BCT 02-AUG-2006 |
| PP1P0007 | Borrelia burgdorferi B31 (section 6 of 70) of the complete genome. |
| PP1E0002 | Botryotinia fuckeliana ornithine decarboxylase antizyme (antizyme) mRNA, complete cds. 1193 bp mRNA... |
| PM1V0023 | Bovine coronavirus, complete genome. 31028 bp ss-RNA linear VRL 30-MAR-2006 |
| PM1V0024 | Bovine immunodeficiency virus, complete genome. 8482 bp ss-RNA linear VRL 30-MAR-2006 |
| EM1V0003 | Bovine leukemia virus complete genome. 8419 bp RNA linear VRL 17-FEB-2004 |
| PM1V0025 | Bovine papillomavirus type 5, complete genome. 7841 bp DNA circular VRL 30-MAR-2006 |
| PM1V0026 | Bovine parainfluenza virus 3, complete genome. 15456 bp ss-RNA linear VRL 30-MAR-2006 |
| PP1P0069 | Bradyrhizobium japonicum USDA 110, complete genome. 9105828 bp DNA circular BCT 24-MAR-2006 |
| PM1V0027 | Breda virus, complete genome. 28475 bp ss-RNA linear VRL 30-MAR-2006 |
| PP1P0030 | Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence, segment 2/2.... |
| PM1V0074 | Burkholderia cenocepacia phage BcepB1A, complete genome. 47399 bp DNA linear PHG 30-MAR-2006 |
| PM1V0069 | Burkholderia cepacia phage BcepNazgul, complete genome. 57455 bp DNA linear PHG 07-APR-2006 |
| PP1P0071 | Burkholderia mallei ATCC 23344 chromosome 1, complete sequence. 3510148 bp DNA circular BCT... |
| PP1E0003 | Caenorhabditis elegans ornithine decarboxylase antizyme, involved in polyamine regulation and... |
| PM1V0028 | Caprine arthritis-encephalitis virus, complete genome. 9189 bp ss-RNA linear VRL 30-MAR-2006 |
| PP1P0067 | Carboxydothermus hydrogenoformans Z-2901, complete genome. 2401520 bp DNA circular BCT 30-MAR-2006 |
| PM1V0009 | Carrot mottle mimic umbravirus (CMoMV) dsRNA1, complete genome. 4201 bp RNA linear VRL 31-MAR-2006 |
| PM1V0029 | Carrot red leaf virus, complete genome. 5723 bp ss-RNA linear VRL 30-MAR-2006 |
| PP1P0008 | Caulobacter crescentus CB15 section 187 of 359 of the complete genome. 13017 bp DNA linear BCT... |
| PM1E0006 | Ceratitis capitata yoyo retrotransposon gag-like, pol-like and env-like genes, complete cds. 7698 bp... |
| EM1V0005 | Cereal yellow dwarf virus - RPV complete genome. 5723 bp ss-RNA linear VRL 19-JUN-2002 |
| PM1V0016 | Cereal yellow dwarf virus-RPS RPV Mex-1, complete genome. 5662 bp RNA linear VRL 21-APR-2003 |
| PM1V0030 | Cestrum yellow leaf curling virus, complete genome. 8253 bp DNA linear VRL 30-MAR-2006 |
| PM1V0031 | Chicken anemia virus, complete genome. 2319 bp ss-DNA circular VRL 30-MAR-2006 |
| PM1V0032 | Chicken astrovirus, complete genome. 6927 bp ss-RNA linear VRL 30-MAR-2006 |
| PM1V0066 | Chickpea chlorotic stunt virus, complete genome. 5900 bp ss-RNA linear VRL 25-JUL-2006 |
| PP1P0010 | Chlamydia muridarum Nigg section 70 of 85 of the complete genome. 12990 bp DNA linear BCT... |
| PP1P0009 | Chlamydia trachomatis D/UW-3/CX section 47 of 87 of the complete genome. |
| PP1P0031 | Chlamydophila caviae GPIC section 1 of 4 of the complete genome. 304769 bp DNA linear BCT... |
| PP1P0011 | Chlamydophila pneumoniae TW-183, section 3 of 4 of the complete genome. 300066 bp DNA linear BCT... |
| PP1P0032 | Chlorobium tepidum TLS section 179 of 194 of the complete genome. 10134 bp DNA linear BCT... |
| PM1V0033 | Choristoneura fumiferana defective nucleopolyhedrovirus, complete genome. 131160 bp DNA circular VRL... |
| PP1P0058 | Chromobacterium violaceum ATCC 12472, complete genome. 4751080 bp DNA circular BCT 03-APR-2006 |
| EM1V0035 | Cloning vector TLF97-3, phage lambda lacZ translational fusion vector, complete sequence. 42531 bp... |
| PP1P0012 | Clostridium acetobutylicum ATCC 824 section 270 of 356 of the complete genome. 10266 bp DNA linear... |
| PP1P0036 | Clostridium perfringens ATCC 13124, complete genome. 3256683 bp DNA circular BCT 28-JUL-2006 |
| EM1V0030 | Cocksfoot Mottle Virus genes for polyprotein, RNA dependent RNA polymerase and coat protein. 4082 bp... |
| PP1P0074 | Colwellia psychrerythraea 34H, complete genome. 5373180 bp DNA circular BCT 17-JAN-2006 |
| PP1P0084 | Coxiella burnetii RSA 493, complete genome. 1995281 bp DNA circular BCT 17-JAN-2006 |
| EM1V0006 | Cucurbit aphid-borne yellows virus genomic RNA. 5669 bp RNA linear VRL 18-APR-2005 |
| PP1P0039 | Cytophaga hutchinsonii ATCC 33406, complete genome. 4433218 bp DNA circular BCT 25-JUL-2006 |
| PM1E0013 | D.ananassae Tom retrotransposon DNA sequence. 7060 bp DNA linear INV 03-AUG-1995 |
| EP1E0008 | Danio rerio mRNA for ornithine decarboxylase antizyme, complete cds. |
| EP1E0007 | Danio rerio mRNA for ornithine decarboxylase antizyme long isoform, complete cds. 2038 bp mRNA... |
| PP1P0054 | Dehalococcoides ethenogenes 195, complete genome. 1469720 bp DNA circular BCT 03-APR-2006 |
| PP1P0080 | Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome. 3570858 bp DNA circular... |
| PM1E0002 | Drosophila buzzatii osvaldo retrotransposon. 9085 bp DNA linear INV 12-JUN-2006 |
| PM1E0010 | Drosophila melanogaster, chromosome X, region 17A-17B, BAC clone BACR10E05, complete sequence.... |
| PM1E0008 | Drosophila melanogaster chromosome 3R, section 18 of 118 of the complete sequence. 270517 bp DNA... |
| PM1E0005 | Drosophila melanogaster copia-like element 17.6. 7439 bp DNA linear INV 18-APR-2005 |
| PM1E0001 | Drosophila melanogaster gypsy transposable element, complete sequence. 7469 bp DNA linear INV... |
| EP1E0001 | Drosophila melanogaster ornithine decarboxylase antizyme mRNA, complete cds. 1654 bp mRNA linear INV... |
| PM1E0007 | Drosophila melanogaster transposable element 297. 6995 bp DNA linear INV 18-APR-2005 |
| PM1E0009 | Drosophila melanogaster X BAC RP98-15B10 (Roswell Park Cancer Institute Drosophila BAC Library)... |
| EM1P0003 | E. coli insertion element IS150 complete sequence. 1443 bp DNA linear BCT 17-FEB-1997 |
| PP1P0061 | Ehrlichia chaffeensis str. Arkansas, complete genome. 1176248 bp DNA circular BCT 30-MAR-2006 |
| PM1V0008 | Enterobacteria phage 186, complete genome. 30624 bp DNA linear PHG 07-APR-2006 |
| PM1V0064 | Enterobacteria phage HK022 virion, complete genome. 40751 bp DNA linear PHG 30-MAR-2006 |
| EM1V0021 | Enterobacteria phage P2, complete genome. 33593 bp DNA linear PHG 30-MAR-2006 |
| EM1V0034 | Enterobacteria phage T7, complete genome. 39938 bp DNA linear PHG 14-NOV-2003 |
| PP1P0013 | Enterococcus faecalis V583, section 6 of 11 of the complete genome. 300029 bp DNA linear BCT... |
| PM1V0068 | Enzootic nasal tumour virus of goats, complete genome. 7448 bp ss-RNA linear VRL 30-MAR-2006 |
| EM1V0038 | Equine arteritis virus, complete genome. 12704 bp ss-RNA linear VRL 30-MAR-2006 |
| EM1V0007 | Equine infectious anemia virus complete genome. 8359 bp RNA linear VRL 03-DEC-1998 |
| EP1P0001 | Escherichia coli K12 MG1655 section 262 of 400 of the complete genome. 12144 bp DNA linear BCT... |
| EM1P0001 | Escherichia coli K12 MG1655 section 43 of 400 of the complete genome. 10103 bp DNA linear BCT... |
| EM1P0004 | Escherichia coli plasmid pIP1100 class II integron multidrug resistance locus, partial sequence.... |
| PP1P0038 | Escherichia coli W3110 DNA, complete genome. 4646332 bp DNA circular BCT 12-APR-2006 |
| PP1E0013 | Euplotes octocarinatus macronuclear mRNA for putative nuclear protein kinase (npk 2 gene). 1314 bp... |
| EM1V0008 | Feline immunodeficiency virus complete genome. 9474 bp ss-RNA linear VRL 04-MAR-1996 |
| PP1P0040 | Francisella tularensis subsp. tularensis FSC 198, complete genome. 1892616 bp DNA circular BCT... |
| PP1E0005 | Gallus gallus ornithine decarboxylase antizyme mRNA, complete cds. 1020 bp mRNA linear VRT... |
| EM1V0022 | Gardiavirus genomic sequence. 6277 bp ds-RNA linear VRL 04-JUN-1996 |
| PP1P0082 | Geobacter sulfurreducens PCA, complete genome. 3814139 bp DNA circular BCT 18-JAN-2006 |
| EM1V0029 | Gill-associated virus ORF1a polyprotein (ORF1a) gene, complete cds; and ORF1ab replicase polyprotein... |
| PM1V0010 | Groundnut rosette virus RNA for orf[1,2,3,4]. 4019 bp RNA linear VRL 30-SEP-1996 |
| PP1P0001 | Haemophilus ducreyi strain 35000HP section 2 of 6 of the complete genome. 301191 bp DNA linear BCT... |
| PP1P0002 | Haemophilus influenzae Rd KW20 section 115 of 163 of the complete genome. 10411 bp DNA linear BCT... |
| PM1V0011 | Haemophilus phage HP1, complete genome. 32355 bp DNA linear PHG 30-MAR-2006 |
| PM1V0012 | Haemophilus phage HP2, complete genome. 31508 bp DNA linear PHG 30-MAR-2006 |
| PP1P0065 | Hahella chejuensis KCTC 2396, complete genome. 7215267 bp DNA circular BCT 30-MAR-2006 |
| PM1E0004 | Homo sapiens mRNA for KIAA1051 protein, partial cds. 6188 bp mRNA linear PRI 31-JAN-2006 |
| EP1E0005 | Homo sapiens ornithine decarboxylase antizyme 2 (OAZ2), mRNA. 1906 bp mRNA linear PRI 19-MAR-2006 |
| PP1E0011 | Homo sapiens ornithine decarboxylase antizyme 3 (OAZ3), mRNA. 887 bp mRNA linear PRI 16-APR-2006 |
| PM1V0001 | Human astrovirus serotype 2, complete sequence of genomic RNA. 6828 bp ss-RNA linear VRL 08-MAR-1994... |
| EM1V0009 | Human coronavirus 229E mRNA for RNA polymerase and proteases. 20580 bp mRNA linear VRL 13-JUL-2001 |
| PM1V0034 | Human coronavirus HKU1, complete genome. 29926 bp ss-RNA linear VRL 30-MAR-2006 |
| PM1V0035 | Human coronavirus NL63, complete genome. 27553 bp ss-RNA linear VRL 30-MAR-2006 |
| PM1V0036 | Human coronavirus OC43, complete genome. 30738 bp RNA linear VRL 30-MAR-2006 |
| EM1E0003 | Human endogenous retrovirus HERV-K10. 9179 bp DNA linear PRI 13-FEB-1996 |
| PM1V0037 | Human herpesvirus 3 (strain Dumas), complete genome. 124884 bp DNA linear VRL 30-MAR-2006 |
| EM1V0024 | Human immunodeficiency virus 2, complete genome. 10359 bp ss-RNA linear VRL 30-MAR-2006 |
| EM1V0023 | Human immunodeficiency virus type 1 (HXB2), complete genome; HIV1/HTLV-III/LAV reference genome.... |
| EP1E0003 | Human mRNA for ornithine decarboxylase antizyme, ORF 1 and ORF 2. 1063 bp mRNA linear PRI... |
| EM1V0026 | Human T-cell lymphotropic virus 1, complete genome. 8507 bp DNA linear VRL 17-FEB-2004 |
| EM1V0027 | Human T-lymphotropic virus 2, complete proviral genome. 8952 bp DNA linear VRL 29-AUG-2002 |
| PM1V0038 | Jembrana disease virus, complete genome. 7732 bp ss-RNA linear VRL 30-MAR-2006 |
| EM1V0010 | Lactate dehydrogenase-elevating virus polyprotein (ORF1a ORF1b), complete cds,... |
| PM1V0007 | Lactobacillus casei bacteriophage A2 virus, complete genome. 43411 bp DNA linear PHG 21-JUN-2006 |
| PP1P0047 | Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome. 1864998 bp DNA circular BCT... |
| PP1P0035 | Lactobacillus sakei subsp. sakei 23K, complete genome. 1884661 bp DNA circular BCT 03-AUG-2006 |
| EM1V0015 | Lelystad virus, complete genome. 15111 bp ss-RNA linear VRL 08-NOV-2000 |
| PP1P0028 | Listeria monocytogenes secA gene, complete cds. 2905 bp DNA linear BCT 08-OCT-1994 |
| PM1V0039 | Lumpy skin disease virus NI-2490, complete genome. 150773 bp DNA linear VRL 30-MAR-2006 |
| PM1V0004 | Mason-Pfizer monkey virus, complete genome. 8557 bp RNA linear VRL 17-FEB-2004 |
| PP1E0006 | Mesocricetus auratus ornithine decarboxylase antizyme (ODC-Az) mRNA, complete cds. 1044 bp mRNA... |
| PP1P0033 | Mesorhizobium loti DNA, complete genome, section 1/21. 347660 bp DNA linear BCT 15-MAY-2001 |
| PP1P0055 | Methylococcus capsulatus str. Bath, complete genome. 3304561 bp DNA circular BCT 03-APR-2006 |
| PM1V0040 | Mink astrovirus, complete genome. 6610 bp ss-RNA linear VRL 30-MAR-2006 |
| EM1V0019 | Mouse hepatitis virus strain MHV-A59 C12 mutant, complete genome. 31357 bp RNA linear VRL... |
| EM1V0011 | Mouse mammary tumor virus complete proviral genome. 8805 bp DNA linear VRL 15-OCT-2001 |
| EM1V0028 | Mouse mammary tumor virus complete proviral genome. 8805 bp DNA linear VRL 15-OCT-2001 |
| PM1V0041 | Murine hepatitis virus strain JHM, complete genome. 31526 bp ss-RNA linear VRL 30-MAR-2006 |
| EM1E0002 | Mus musculus clone MIA14 full-length intracisternal A-particle gag protein gene, complete cds; and... |
| EM1E0001 | Mus musculus mRNA for Edr protein. 5166 bp mRNA linear ROD 15-NOV-2001 |
| EP1E0004 | Mus musculus ornithine decarboxylase antizyme, mRNA (cDNA clone IMAGE:6530039), containing... |
| EP1E0006 | Mus musculus ornithine decarboxylase antizyme 2 (Oaz2), mRNA. 1813 bp mRNA linear ROD 07-MAY-2006 |
| PP1E0012 | Mus musculus ornithine decarboxylase antizyme 3 (Oaz3), mRNA. 912 bp mRNA linear ROD 14-OCT-2005 |
| PM1V0067 | Mycobacteriophage Catera virus, complete genome. 153766 bp DNA linear PHG 28-JUN-2006 |
| PM1V0062 | Mycobacteriophage Halo virus, complete genome. 42289 bp DNA linear PHG 22-JUN-2006 |
| PM1P0006 | Neisseria meningitidis serogroup B strain MC58 section 136 of 206 of the complete genome. 13001 bp... |
| PP1P0062 | Neorickettsia sennetsu str. Miyayama, complete genome. 859006 bp DNA circular BCT 30-MAR-2006 |
| PP1P0059 | Nitrosomonas europaea ATCC 19718, complete genome. 2812094 bp DNA circular BCT 03-APR-2006 |
| PP1E0007 | Onchocerca volvulus ornithine decarboxylase antizyme mRNA, complete cds. 549 bp mRNA linear INV... |
| PM1E0003 | Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018A10, complete sequence. 134414 bp DNA... |
| PM1V0042 | Ovine astrovirus, complete genome. 6440 bp ss-RNA linear VRL 30-MAR-2006 |
| PM1V0043 | Ovine enzootic nasal tumour virus, complete genome. 7434 bp ss-RNA linear VRL 30-MAR-2006 |
| PM1V0044 | Ovine lentivirus, complete genome. 9256 bp ss-RNA linear VRL 07-APR-2006 |
| PM1V0045 | Ovine pulmonary adenocarcinoma virus, complete genome. 7462 bp ss-RNA linear VRL 30-MAR-2006 |
| PM1V0046 | Paramecium bursaria Chlorella virus 1, complete genome. 330743 bp DNA linear VRL 30-MAR-2006 |
| PP1P0003 | Pasteurella multocida subsp. multocida str. Pm70 section 20 of 204 of the complete genome. |
| EM1V0012 | Pea enation mosaic virus-1 polymerase gene, partial cds; coat protein gene, complete... |
| PM1V0047 | Penaeid shrimp infectious myonecrosis virus, complete genome. 7560 bp ds-RNA linear VRL 30-MAR-2006 |
| EM1P0006 | Plasmid F genomic DNA, complete sequence. 99159 bp DNA circular BCT 17-NOV-2005 |
| PM1V0048 | Porcine hemagglutinating encephalomyelitis virus, complete genome. 30480 bp ss-RNA linear VRL... |
| EM1V0016 | Porcine reproductive and respiratory syndrome virus isolate 16244B, 2/18/97(Nebraska)pass.3,... |
| PP1P0004 | Porphyromonas gingivalis W83 section 5 of 8 of the complete genome. 302988 bp DNA linear BCT... |
| EM1V0036 | Potato leaf roll virus (Australian isolate) genomic RNA, complete sequence. 5882 bp RNA linear VRL... |
| PM1V0015 | Potato leaf roll virus (Canadian isolate) genomic RNA, complete sequence. 5883 bp RNA linear VRL... |
| EM1V0014 | Potato leaf roll virus genomic RNA. 5882 bp RNA linear VRL 17-NOV-2004 |
| EM1V0013 | Potato leafroll luteovirus genes for 28K, 70K, 17K and 53K proteins, RNA-dependent RNA polymerase... |
| PP1E0008 | Pristionchus pacificus ornithine decarboxylase antizyme mRNA, complete cds. 560 bp mRNA linear INV... |
| PP1P0045 | Prochlorococcus marinus str. MIT 9313, complete genome. 2410873 bp DNA circular BCT 16-JUN-2006 |
| PP1P0072 | Pseudoalteromonas haloplanktis TAC125 chromosome I, complete sequence. 3214944 bp DNA circular BCT... |
| PP1P0048 | Pseudomonas entomophila L48, complete genome. 5888780 bp DNA circular BCT 31-MAY-2006 |
| PP1P0014 | Pseudomonas putida KT2440 section 6 of 21 of the complete genome. 301995 bp DNA linear BCT... |
| PP1P0042 | Pseudomonas syringae pv. tomato str. DC3000, complete genome. 6397126 bp DNA circular BCT... |
| PP1P0075 | Psychrobacter arcticus 273-4, complete genome. 2650701 bp DNA circular BCT 18-JAN-2006 |
| PM1V0049 | Rabbit fibroma virus, complete genome. 159857 bp DNA linear VRL 30-MAR-2006 |
| EM1P0005 | Rahnella aquatilis insertion sequence IS1222-v1 OrfA (orfA) and OrfB (orfB) genes, complete cds.... |
| EP1E0002 | Rattus norvegicus mRNA for ornithine decarboxylase antizyme, complete cds. 1020 bp mRNA linear ROD... |
| EM1V0031 | Red clover necrotic mosaic virus RNA-1, complete sequence. 3890 bp ss-RNA linear VRL 14-JUN-1996 |
| PP1P0070 | Rhizobium etli CFN 42, complete genome. 4381608 bp DNA circular BCT 10-MAR-2006 |
| PP1P0083 | Rhodopirellula baltica SH 1, complete genome. 7145576 bp DNA circular BCT 18-JAN-2006 |
| PP1P0050 | Rhodopseudomonas palustris CGA009, complete genome. 5459213 bp DNA circular BCT 30-MAY-2006 |
| PP1P0049 | Rickettsia bellii RML369-C, complete genome. 1522076 bp DNA circular BCT 30-MAY-2006 |
| PP1P0052 | Rickettsia felis URRWXCal2, complete genome. 1485148 bp DNA circular BCT 03-APR-2006 |
| PP1P0015 | Rickettsia prowazekii strain Madrid E, complete genome; segment 2/4. 312430 bp DNA linear BCT... |
| PP1P0056 | Rickettsia typhi str. Wilmington, complete genome. 1111496 bp DNA circular BCT 03-APR-2006 |
| EM1V0017 | Rous sarcoma virus genome, strain Prague C (Pr-C). 9312 bp DNA linear VRL 18-APR-2005 |
| EP1E0010 | S.cerevisiae chromosome II reading frame ORF YBL005w. 10506 bp DNA linear PLN 18-APR-2005 |
| EP1E0009 | S.cerevisiae chromosome XV reading frame ORF YOR239w. 2406 bp DNA linear PLN 11-AUG-1997 |
| EP1E0011 | S.cerevisiae genomic DNA, chromosome II from Y element to ILS1 gene. 78600 bp DNA linear PLN... |
| EM1P0007 | S.dysenteriae insertion sequence IS911. 1250 bp DNA linear BCT 02-MAR-1993 |
| EP1P0002 | S.typhimurium peptide chain-release-factor 2 (prfB) gene, complete cds, and HerC gene product, 5'... |
| EP1E0012 | Saccharomyces cerevisiae tRNA-Cys gene, complete sequence; 5' sigma element long terminal repeat,... |
| EM1V0025 | Saccharomyces cerevisiae virus L-A L1 segment capsid protein and RNA polymerase gene, complete cds.... |
| PM1V0050 | Saimiriine herpesvirus 2, complete genome. 112930 bp DNA linear VRL 30-MAR-2006 |
| PP1P0064 | Salinibacter ruber DSM 13855, complete genome. 3551823 bp DNA circular BCT 30-MAR-2006 |
| PM1V0051 | Salmon pancreas disease virus, complete genome. 11919 bp ss-RNA linear VRL 30-MAR-2006 |
| PP1P0016 | Salmonella enterica subsp. enterica serovar Typhi Ty2, section 11of 16 of the complete genome.... |
| PM1P0002 | Salmonella enterica subsp. enterica serovar Typhi Ty2, section 9 of 16 of the complete genome.... |
| PM1P0005 | Salmonella typhi SopE (sopE) gene, complete cds; and unknown genes. 4938 bp DNA linear BCT... |
| EM1P0002 | Salmonella typhimurium adenine phosphoribosyl-transferase (apt) gene, partial cds, and DNA... |
| EM1V0033 | SARS coronavirus, complete genome. 29751 bp ss-RNA linear VRL 20-JUN-2006 |
| PP1P0017 | Shewanella oneidensis MR-1 section 92 of 457 of the complete genome. 12755 bp DNA linear BCT... |
| PP1P0066 | Shigella boydii Sb227, complete genome. 4519823 bp DNA circular BCT 30-MAR-2006 |
| PP1P0037 | Shigella flexneri 5 str. 8401, complete genome. 4574284 bp DNA circular BCT 28-JUL-2006 |
| PM1V0052 | Simian hemorrhagic fever virus, complete genome. 15717 bp ss-RNA linear VRL 30-MAR-2006 |
| PM1V0055 | Simian-Human immunodeficiency virus, complete genome. 10000 bp ss-RNA linear VRL 30-MAR-2006 |
| PM1V0003 | Simian immunodeficiency virus, complete genome. 9623 bp DNA linear VRL 26-APR-2001 |
| PM1V0053 | Simian immunodeficiency virus 2, complete genome. 9518 bp ss-RNA linear VRL 20-JUN-2006 |
| PM1V0005 | Simian retrovirus 2, complete genome. 8105 bp DNA linear VRL 04-SEP-2002 |
| EM1V0018 | Simian SRV-1 type D retrovirus (L47.1), complete genome. 8173 bp ss-RNA circular VRL 28-APR-2003 |
| PM1V0006 | Simian T-cell lymphotropic virus type 1 isolate Tan90 from Central African Republic, complete... |
| PM1V0054 | Simian T-lymphotropic virus 2, complete genome. 8855 bp ss-RNA linear VRL 31-MAY-2006 |
| PP1P0019 | Staphylococcus aureus clone sabac-7, complete sequence. 53354 bp DNA linear BCT 27-MAR-2002 |
| PP1P0073 | Staphylococcus aureus RF122, complete genome. 2742531 bp DNA circular BCT 18-JAN-2006 |
| PP1P0077 | Staphylococcus epidermidis RP62A, complete genome. 2616530 bp DNA circular BCT 17-JAN-2006 |
| PP1P0076 | Staphylococcus haemolyticus JCSC1435, complete genome. 2685015 bp DNA circular BCT 18-JAN-2006 |
| PP1P0068 | Streptococcus agalactiae A909, complete genome. 2127839 bp DNA circular BCT 30-MAR-2006 |
| PP1P0018 | Streptococcus mutans UA159 section 114 of 185 of the complete genome. 10210 bp DNA linear BCT... |
| PP1P0020 | Streptococcus pneumoniae TIGR4 section 66 of 194 of the complete genome. 10029 bp DNA linear BCT... |
| PP1P0021 | Streptococcus pyogenes M1 GAS, section 47 of 167 of the complete genome. 10029 bp DNA linear BCT... |
| PP1P0078 | Streptococcus thermophilus CNRZ1066, complete genome. 1796226 bp DNA circular BCT 18-JAN-2006 |
| PM1V0014 | Subterranean clover mottle virus, complete genome. 4258 bp ss-RNA linear VRL 17-JUN-2006 |
| PM1V0056 | Sugarcane yellow leaf virus, complete genome. 5899 bp ss-RNA linear VRL 30-MAR-2006 |
| PP1P0044 | Synechococcus elongatus PCC 6301, complete genome. 2696255 bp DNA circular BCT 16-JUN-2006 |
| PP1P0022 | Synechocystis sp. PCC 6803 DNA, complete genome, section:17/27, 2137259-2267259. 130001 bp DNA... |
| PP1P0046 | Thermosynechococcus elongatus BP-1, complete genome. 2593857 bp DNA circular BCT 16-JUN-2006 |
| PP1E0009 | Torpedo marmorata ornithine decarboxylase antizyme (antizyme) mRNA, complete cds. 1093 bp mRNA... |
| PM1V0057 | Transmissible gastroenteritis virus, complete genome. 28586 bp ss-RNA linear VRL 20-APR-2006 |
| PP1P0057 | Treponema denticola ATCC 35405, complete genome. 2843201 bp DNA circular BCT 03-APR-2006 |
| PP1P0023 | Treponema pallidum subsp. pallidum str. Nichols section 49 of 87 of the complete genome. 13370 bp... |
| PM1E0011 | Tribolium castaneum A4/Ey Woot retrotransposon, 5' LTR, protease (pol), reverse transcriptase... |
| PM1V0072 | Trichomonas vaginalis virus 3, complete genome. 4844 bp ds-RNA linear VRL 30-MAR-2006 |
| EM1V0037 | Trichomonas vaginalis virus II capsid protein (cap) gene, complete cds; and RNA-dependent RNA... |
| PM1V0058 | Turkey astrovirus, complete genome. 7003 bp ss-RNA linear VRL 30-MAR-2006 |
| PM1V0059 | Turkey astrovirus 2, complete genome. 7355 bp ss-RNA linear VRL 30-MAR-2006 |
| PM1V0060 | Turnip rosette virus, complete genome. 4037 bp ss-RNA linear VRL 30-MAR-2006 |
| EM1V0004 | Turnip yellows virus (BWYV-FL1) genomic RNA. 5641 bp RNA linear VRL 24-APR-2003 |
| PP1P0024 | Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 60 of 251 of the complete... |
| PM1P0003 | Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 95 of 251 of the complete... |
| PM1V0061 | Visna virus, complete genome. 9202 bp ss-RNA linear VRL 30-MAR-2006 |
| PP1P0085 | Xanthomonas axonopodis pv. citri str. 306, complete genome. 5175554 bp DNA circular BCT 17-JAN-2006 |
| PP1P0025 | Xanthomonas campestris pv. campestris str. ATCC 33913, section 195 of 460 of the complete genome.... |
| PP1P0053 | Xanthomonas oryzae pv. oryzae KACC10331, complete genome. 4941439 bp DNA circular BCT 03-APR-2006 |
| PP1E0010 | Xenopus laevis mRNA for ornithine decarboxylase antizyme, complete cds. 997 bp mRNA linear VRT... |
| PP1P0026 | Xylella fastidiosa 9a5c, section 93 of 229 of the complete genome. 13352 bp DNA linear BCT... |
| PP1P0060 | Xylella fastidiosa Temecula1, complete genome. 2519802 bp DNA circular BCT 03-APR-2006 |
| PM1P0004 | Yersinia pestis KIM section 109 of 415 of the complete genome. 13202 bp DNA linear BCT 26-JUL-2002 |
| PP1P0027 | Yersinia pestis KIM section 328 of 415 of the complete genome. 11175 bp DNA linear BCT 26-JUL-2002 |
| PM1P0001 | Yersinia pestis strain CO92 complete genome; segment 15/20. 205050 bp DNA linear BCT 15-APR-2005 |