Overall information

FSDB ID	PM1V0070	Type	-1 frameshifting
Data	PREDICTED	Kingdom	viruses
Definition	Bacteriophage WPhi, complete genome. 32684 bp DNA linear PHG 30-MAR-2006
Resource	[1] predicted by FSFinder
Nucleic acid sequence		NC_005056
Amino acid sequence
gene	17614..18041 /locus_tag="WPhip24" /note="E+E'" /db_xref="GeneID:1457757"
CDS	Click for details join(17614..17868,17868..18041) /locus_tag="WPhip24" /inference="non-experimental evidence, no additional details recorded" /ribosomal_slippage /note="similar to P2 E+E'; tail protein; shares amino terminus with gpE; -1 translational frameshift" /codon_start=1 /transl_table=11 /product="gpE+E'" /protein_id="NP_878222.1" /db_xref="GI:33438922" /db_xref="GeneID:1457757" /translation="MNKENVITLDNPVKRGEQVIEQVTLMKPNAGTLRGVSLAAVANS EVDALIKVLPRMTAPMLTEQEVAALELPDLVALAGKVVGFLVAELGAVTFPKNFSVDD LMADVAVIFHWPPSELYPMSLTELITWREKALRRSGNTNE"

Graphical view

17850 TAAGGTGGTCGG TTTTTTG TCGCC GAACTCGGTGCAGTGACGTTCCCGA
Stop codons	TAA (17850),
Slippery sequence	TTTTTTG (17862 - 17868)
Spacer	TCGCC (5 nt)
Stimulatory structure	GAACTCGGTGCAGTGACGTTCCCGA (17874 - 17898)
	PREDICTED STRUCTURE Predicted by pknotsRG with the minimum energy option Visualized by PseudoViewer

Model

-1 frameshift signal

FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)

Target gene

genes in viruses

Sequence type

Patial genome

Direction

+ strand

Pattern

Pattern
Match
Exceptions AAA UUU

spacer

nt

RNA structure

Stem Pseudoknot
- Stem1	<
- Stem2	<
- Loop1	<
- Loop2	<
- Loop3	<