Overall information
FSDB ID PM1V0057 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Transmissible gastroenteritis virus, complete genome. 28586 bp ss-RNA linear VRL 20-APR-2006
Resource [1] predicted by FSFinder
[2] Almazan F, Gonzalez JM, Penzes Z, Izeta A, Calvo E, Plana-Duran J, Enjuanes L. Proc Natl Acad Sci U S A. 2000 May 9;97(10):5516-21.
Nucleic acid sequence NC_002306
Amino acid sequence
gene 
315..20368
/locus_tag="TGEVgp1"
/db_xref="GeneID:1724653"
CDS Click for details
gene 
20365..24708
/gene="s"
/locus_tag="TGEVgp3"
/db_xref="GeneID:920849"
CDS Click for details
Graphical view

12320
TGATCAAAGTTA
TTTAAAC
GAGTGCG
GGGTTCTAGTGCAGCTCGACTAGAACCC
Stop codons TGA (12320),
Slippery sequence
TTTAAAC (12332 - 12338)
Spacer GAGTGCG (7 nt)
Stimulatory structure
GGGTTCTAGTGCAGCTCGACTAGAACCC (12346 - 12373)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
20356
TAACACACCATG
AAAAAAC
TATTTG
TGGTTTTGGTCGTAATGCCATTGATTTATGGAGACAATTTTCCTTGTTCTAAATTGACTAATAGAACTATAGGCAACCA
Stop codons TAA (20356),
Slippery sequence
AAAAAAC (20368 - 20374)
Spacer TATTTG (6 nt)
Stimulatory structure
TGGTTTTGGTCGTAATGCCATTGATTTATGGAGACAATTTTCCTTGTTCTAAATTGACTAATAGAACTATAGGCAACCA (20381 - 20459)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<