Overall information
FSDB ID PM1E0006 Type -1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Ceratitis capitata yoyo retrotransposon gag-like, pol-like and env-like genes, complete cds. 7698 bp DNA linear INV 06-JUL-2004
Resource [1] Gao X, Havecker ER, Baranov PV, Atkins JF, Voytas DF. RNA. 2003 Dec;9(12):1422-30.
Nucleic acid sequence U60529
Amino acid sequence
gene
gag-pol
CDS Click for details
CDS Click for details
Graphical view

2357
TAATATTCTAGAAGAAAACGAATACGAATTTTCCGATATACA
TTTTTTA
GATT
AACGAACTCCACGTTACCATACTTTCAATGTAAAGATAGTAACGGAGATATTTTAAAATTTTTGATTGATACAGGGTCAAATAAAAA
Stop codons TAA (2357),
Slippery sequence
TTTTTTA (2399 - 2405)
Spacer GATT (4 nt)
Stimulatory structure
AACGAACTCCACGTTACCATACTTTCAATGTAAAGATAGTAACGGAGATATTTTAAAATTTTTGATTGATACAGGGTCAAATAAAAA (2410 - 2496)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<