Overall information
FSDB ID PM1E0008 Type -1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Drosophila melanogaster chromosome 3R, section 18 of 118 of the complete sequence. 270517 bp DNA linear INV 13-JAN-2006
Resource [1] Gao X, Havecker ER, Baranov PV, Atkins JF, Voytas DF. RNA. 2003 Dec;9(12):1422-30.
Nucleic acid sequence AE003680
Amino acid sequence
gene 
gag-pol
CDS Click for details
Graphical view

248065
TGACGAATCAGACAATACCAAAGAAGCAGA
AAATTTT
CGGC
TAGTTGCCCCGGATCAAACCAATATATAATTATTAAACATAATGACATAGACTTAAAGTGCCTAATTGACACTGGATCCACCATAAA
Stop codons TGA (248065),
Slippery sequence
AAATTTT (248095 - 248101)
Spacer CGGC (4 nt)
Stimulatory structure
TAGTTGCCCCGGATCAAACCAATATATAATTATTAAACATAATGACATAGACTTAAAGTGCCTAATTGACACTGGATCCACCATAAA (248106 - 248192)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<