Overall information
FSDB ID PM1E0005 Type -1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Drosophila melanogaster copia-like element 17.6. 7439 bp DNA linear INV 18-APR-2005
Resource [1] Saigo K, Kugimiya W, Matsuo Y, Inouye S, Yoshioka K, Yuki S. Nature. 1984 Dec 13-19;312(5995):659-61.
[2] Gao X, Havecker ER, Baranov PV, Atkins JF, Voytas DF. RNA. 2003 Dec;9(12):1422-30.
Nucleic acid sequence X01472
Amino acid sequence
gene
ORF1 - ORF2
CDS Click for details
CDS Click for details
Graphical view

2342
TGAACAGGCCGA
AAATTTT
CAGCCA
CAAGCCTTG
Stop codons TGA (2342),
Slippery sequence
AAATTTT (2354 - 2360)
Spacer CAGCCA (6 nt)
Stimulatory structure
CAAGCCTTG (2367 - 2375)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<