Overall information
FSDB ID PM1V0013 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Bacteriophage K139, complete genome. 33106 bp DNA linear PHG 30-MAR-2006
Resource [1] Christie GE, Temple LM, Bartlett BA, Goodwin TS. J Bacteriol. 2002 Dec;184(23):6522-31.
Nucleic acid sequence NC_003313
Amino acid sequence
gene
22798..23376
/locus_tag="K139p35"
/db_xref="GeneID:929097"
CDS Click for details
Graphical view

23334
TGAAGCCTCAAAAGGCGGCATCACCATCACCCT
AAAAAAC
TAAAA
GAGCGGGTAGAGCGCATTGAAGAGAACGGCATCGAACAAGCGCTCATTTTGCGGCGTCATTACCTACCC
Stop codons TGA (23334),
Slippery sequence
AAAAAAC (23367 - 23373)
Spacer TAAAA (5 nt)
Stimulatory structure
GAGCGGGTAGAGCGCATTGAAGAGAACGGCATCGAACAAGCGCTCATTTTGCGGCGTCATTACCTACCC (23379 - 23447)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<