Overall information
FSDB ID PM1V0056 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Sugarcane yellow leaf virus, complete genome. 5899 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
[2] Moonan F, Molina J, Mirkov TE. Virology. 2000 Mar 30;269(1):156-71.
Nucleic acid sequence NC_000874
Amino acid sequence
gene
242..3453
/locus_tag="Sylvgp2"
/db_xref="GeneID:1455647"
CDS Click for details
Graphical view

1732
TGATCAGCCGACTCCAGACCA
GGGAAAC
GAGCCAA
GTGGCGCCGACCACTTAAAAACACCGGAATCCAC
Stop codons TGA (1732),
Slippery sequence
GGGAAAC (1753 - 1759)
Spacer GAGCCAA (7 nt)
Stimulatory structure
GTGGCGCCGACCACTTAAAAACACCGGAATCCAC (1767 - 1800)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<