Overall information
FSDB ID EM1V0015 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Lelystad virus, complete genome. 15111 bp ss-RNA linear VRL 08-NOV-2000
Resource [1] Meulenberg JJ, Hulst MM, de Meijer EJ, Moonen PL, den Besten A, de Kluyver EP, Wensvoort G, Moormann RJ. Virology. 1993 Jan;192(1):62-72.
Nucleic acid sequence M96262
Amino acid sequence
CDS Click for details
CDS Click for details
Graphical view

7391
TGAACAGGC
TTTAAAC
TGTTA
GCCGCCAGCGGCTTGACCCGCTGTGGCCGCGGCGGCCTAGTTGTGACT
Stop codons TGA (7391),
Slippery sequence
TTTAAAC (7400 - 7406)
Spacer TGTTA (5 nt)
Stimulatory structure
GCCGCCAGCGGCTTGACCCGCTGTGGCCGCGGCGGCCTAGTTGTGACT (7412 - 7459)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<