Overall information
FSDB ID EM1V0013 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Potato leafroll luteovirus genes for 28K, 70K, 17K and 53K proteins, RNA-dependent RNA polymerase and coat protein, complete and partial cds. 5987 bp RNA linear VRL 29-MAY-2002
Resource [1] Mayo MA, Robinson DJ, Jolly CA, Hyman L. J Gen Virol. 1989 May;70 ( Pt 5):1037-51.
[2] ten Dam EB, Pleij CW, Bosch L. Virus Genes. 1990 Jul;4(2):121-36.
[3] Kujawa AB, Drugeon G, Hulanicka D, Haenni AL. Nucleic Acids Res. 1993 May 11;21(9):2165-71.
Nucleic acid sequence D00530
Amino acid sequence
CDS Click for details
CDS Click for details
Graphical view

1642
TGAGGATTACGGTCTGGAGAGAGAGGCTGCAACAAATGCGCCCGCAGAGAAAACTGCTCAAACAAACTCAGCAGAGAAGACTGCTCCATCAACTTCAGCAGAGAAAACTGCTCTAACAAACAAGCC
TTTAAAT
GGGCAA
GCGGCACCGTCCGCCAAAACAAACGG
Stop codons TGA (1642),
Slippery sequence
TTTAAAT (1768 - 1774)
Spacer GGGCAA (6 nt)
Stimulatory structure
GCGGCACCGTCCGCCAAAACAAACGG (1781 - 1806)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<