Overall information
FSDB ID PM1V0036 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Human coronavirus OC43, complete genome. 30738 bp RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
[2] Vijgen L, Keyaerts E, Moes E, Thoelen I, Wollants E, Lemey P, Vandamme AM, Van Ranst M. J Virol. 2005 Feb;79(3):1595-604.
Nucleic acid sequence NC_005147
Amino acid sequence
gene 
211..21497
/locus_tag="HCoVOC43gp1"
/db_xref="GeneID:2983739"
CDS Click for details
Graphical view

13335
TTTAAAC
GGGTT
CGGGGTACGAGTGTAGATGCCCGTCTCGTACCCTGCGCCAGTGGTTTATCTACTGATGTAC
Slippery sequence
TTTAAAC (13335 - 13341)
Spacer GGGTT (5 nt)
Stimulatory structure
CGGGGTACGAGTGTAGATGCCCGTCTCGTACCCTGCGCCAGTGGTTTATCTACTGATGTAC (13347 - 13407)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<