Overall information
FSDB ID PM1V0011 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Haemophilus phage HP1, complete genome. 32355 bp DNA linear PHG 30-MAR-2006
Resource [1] Christie GE, Temple LM, Bartlett BA, Goodwin TS. : J Bacteriol. 2002 Dec;184(23):6522-31.
Nucleic acid sequence NC_001697
Amino acid sequence
gene 
21185..21493
/locus_tag="HP1p33"
/db_xref="GeneID:1261119"
CDS Click for details
gene 
21682..23751
/locus_tag="HP1p34"
/db_xref="GeneID:1261109"
CDS Click for details
Graphical view

21451
TGAAGTGTTTGTGCCAGAAATTCAAATTACCGT
AAAAAAC
TAACGG
AGCGTGTGGCAAGTATCGAGCGCAACGGGTTATCACAAGCCATTGCGCTACGTATGCACTATTTACCACACGC
Stop codons TGA (21451),
Slippery sequence
AAAAAAC (21484 - 21490)
Spacer TAACGG (6 nt)
Stimulatory structure
AGCGTGTGGCAAGTATCGAGCGCAACGGGTTATCACAAGCCATTGCGCTACGTATGCACTATTTACCACACGC (21497 - 21569)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<