Overall information
FSDB ID EP1E0010 Type +1 frameshifting
Data EXPERIMENTAL Kingdom eukaryota
Definition S.cerevisiae chromosome II reading frame ORF YBL005w. 10506 bp DNA linear PLN 18-APR-2005
Resource [1] Belcourt MF, Farabaugh PJ. Cell. 1990 Jul 27;62(2):339-52.
[2] Roth JF. Yeast. 2000 Jun 30;16(9):785-95.
[3] Burck CL, Chernoff YO, Liu R, Farabaugh PJ, Liebman SW. RNA. 1999 Nov;5(11):1451-7.
[4] Tumer NE, Parikh BA, Li P, Dinman JD. J Virol. 1998 Feb;72(2):1036-42.
[5] Balasundaram D, Dinman JD, Wickner RB, Tabor CW, Tabor H. Proc Natl Acad Sci U S A. 1994 Jan 4;91(1):172-6.
[6] Kawakami K, Pande S, Faiola B, Moore DP, Boeke JD, Farabaugh PJ, Strathern JN, Nakamura Y, Garfinkel DJ. Genetics. 1993 Oct;135(2):309-20.
[7] Clare J, Farabaugh P. Proc Natl Acad Sci U S A. 1985 May;82(9):2829-33.
[8] Clare JJ, Belcourt M, Farabaugh PJ. Proc Natl Acad Sci U S A. 1988 Sep;85(18):6816-20.
[9] Wilson W, Malim MH, Mellor J, Kingsman AJ, Kingsman SM. Nucleic Acids Res. 1986 Sep 11;14(17):7001-16.
[10] Stahl G, Salem SN, Chen L, Zhao B, Farabaugh PJ. Eukaryot Cell. 2004 Apr;3(2):331-8.
Nucleic acid sequence Z35766 Y13134
Amino acid sequence
gene 
join(4201..5505,5507..9469)
/gene="TY1B"
CDS Click for details
Graphical view

5480
TGAAGAATACACACGACCTTCAC
CTTAGGC
CAGGAACTTA
CTGAATCTACGGTAAATCACACTAATCATTCTGATGATGAACTCCCTGGACACCTCCTTCTTGATTCAG
Stop codons TGA (5480),
Slippery sequence
CTTAGGC (5503 - 5509)
Spacer CAGGAACTTA (10 nt)
Stimulatory structure
CTGAATCTACGGTAAATCACACTAATCATTCTGATGATGAACTCCCTGGACACCTCCTTCTTGATTCAG (5520 - 5588)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model +1 eukaryote frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<