Overall information
FSDB ID PM1E0002 Type -1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Drosophila buzzatii osvaldo retrotransposon. 9085 bp DNA linear INV 12-JUN-2006
Resource [1] Pantazidis A, Labrador M, Fontdevila A. Mol Biol Evol. 1999 Jul;16(7):909-21.
[2] Gao X, Havecker ER, Baranov PV, Atkins JF, Voytas DF. RNA. 2003 Dec;9(12):1422-30.
Nucleic acid sequence AJ133521
Amino acid sequence
gene 
1267..2509
/gene="gag"
CDS Click for details
Graphical view

2440
GGGAAAC
GACCA
GCGGTACCCGCAGTCCAGGGGGGAGCGGGAGCAATGCCAAACAGCCCC
Slippery sequence
GGGAAAC (2440 - 2446)
Spacer GACCA (5 nt)
Stimulatory structure
GCGGTACCCGCAGTCCAGGGGGGAGCGGGAGCAATGCCAAACAGCCCC (2452 - 2499)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene prfB gene
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<