Overall information
FSDB ID EM1V0027 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Human T-lymphotropic virus 2, complete proviral genome. 8952 bp DNA linear VRL 29-AUG-2002
Resource [1] Kollmus H, Honigman A, Panet A, Hauser H. J Virol. 1994 Sep;68(9):6087-91.
Nucleic acid sequence M10060
Amino acid sequence
gene
gag-pro-pol
CDS Click for details
CDS Click for details
Graphical view

2075
TGAGGA
AAAAAAC
TCCTTA
AGGGGGGAGATCTAATCTCCCCCCATCCCGATCAAGACATCTCGATACTCCCACTCATCCCCCT
Stop codons TGA (2075),
Slippery sequence
AAAAAAC (2081 - 2087)
Spacer TCCTTA (6 nt)
Stimulatory structure
AGGGGGGAGATCTAATCTCCCCCCATCCCGATCAAGACATCTCGATACTCCCACTCATCCCCCT (2094 - 2157)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer

2236
TGACACAGGAGCCGACCTTACGGTTATACCCCAGACACTCGTGCCCGGGCCGGTAAAGCTCCACGACACCCTGATCCTAGGCGCCAGTGGGCAAACCAACACCCAGTTCAAACTCCTCCAAACCCCCCTACACATATTCTTGCCCTTCCGAAGGTCCCCCGTTATCCTTTCCTCCTGCCTCTTAGACACCCACAACAAATGGACCATCATTGGAAGGGACGCCCTACAACAATGCCAGGGGCTTCTATACCTCCCAGACGACCCCAGCCCCCACCAATTGCTGCCAATAGCCACTCCAAACACCATAGGCCTCGAACACCTTCCCCCACCTCCCCAAGTGGACCAATTTCC
TTTAAAC
CTGAGC
GCCTCCAGGCCTTAAATGACCTGGTCTCCAAGGCCCTGGAGGCTGGTCACATTGAACCATACTCAGGACCAGGC
Stop codons TGA (2236),
Slippery sequence
TTTAAAC (2587 - 2593)
Spacer CTGAGC (6 nt)
Stimulatory structure
GCCTCCAGGCCTTAAATGACCTGGTCTCCAAGGCCCTGGAGGCTGGTCACATTGAACCATACTCAGGACCAGGC (2600 - 2673)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<