Overall information
FSDB ID EM1P0006 Type -1 frameshifting
Data EXPERIMENTAL Kingdom prokaryota
Definition Plasmid F genomic DNA, complete sequence. 99159 bp DNA circular BCT 17-NOV-2005
Resource [1] Sekine Y, Eisaki N, Ohtsubo E. J Mol Biol. 1994 Feb 4;235(5):1406-20.
Nucleic acid sequence AP001918
Amino acid sequence
gene 
66..365
/gene="yaaA"
CDS Click for details
gene 
362..1228
/gene="yaaB"
CDS Click for details
gene 
15158..15457
/gene="ybfA"
CDS Click for details
gene 
15454..16320
/gene="ybfB"
CDS Click for details
Graphical view

308
TGAAGAGCTGGCTATCCTCC
AAAAG
GCCGC
GACATACTTCGCGAAGCGCCTGAAATGAAGTATGTC
Stop codons TGA (308),
Slippery sequence
AAAAG (328 - 332)
Spacer GCCGC (5 nt)
Stimulatory structure
GACATACTTCGCGAAGCGCCTGAAATGAAGTATGTC (338 - 373)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
15400
TGAAGAGCTGGCTATCCTCC
AAAAG
GCCG
CGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGTCG
Stop codons TGA (15400),
Slippery sequence
AAAAG (15420 - 15424)
Spacer GCCG (4 nt)
Stimulatory structure
CGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGTCG (15429 - 15512)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<