Overall information
FSDB ID PM1V0017 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Bacteriophage phi CTX, complete genome. 35580 bp DNA circular PHG 30-MAR-2006
Resource [1] Christie GE, Temple LM, Bartlett BA, Goodwin TS. J Bacteriol. 2002 Dec;184(23):6522-31.
Nucleic acid sequence NC_003278
Amino acid sequence
gene 
18766..19092
/locus_tag="phiCTXp26"
/db_xref="GeneID:927297"
CDS Click for details
gene 
19101..19220
/locus_tag="phiCTXp27"
/db_xref="GeneID:927296"
CDS Click for details
Graphical view

18789
TGACCTGCAGAACGCTCCCGACAACGTCGTCCCCCTCGACCAGCCGATCAAGCGCGGCGCCCAGTCCATCGAATCGCTCACCCTGCGCAAGCCCTCCTCTGGCGAACTGCGCGGCCTGCACCTGCTCGACCTGCTGCAGTTCGATGTGGCCGCGACCATCAAAATCCTGCCGCGCATCAGCCAGCCGACCATCACCGAGCCCGAGGCCACCGGCATGGACCCGGCCGACCTCCTTGCCTGCGGCCAGGTGATCGCCGG
TTTTTTG
CTGCAGAAGCG
GGCGAAGGCAGCCTCCCTGATCGCGTAGAAAACGCCATGGCCGACCTGGCCGTGACGTTTCACTGGGCGCC
Stop codons TGA (18789),
Slippery sequence
TTTTTTG (19047 - 19053)
Spacer CTGCAGAAGCG (11 nt)
Stimulatory structure
GGCGAAGGCAGCCTCCCTGATCGCGTAGAAAACGCCATGGCCGACCTGGCCGTGACGTTTCACTGGGCGCC (19065 - 19135)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<