Overall information
FSDB ID PM1V0006 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Simian T-cell lymphotropic virus type 1 isolate Tan90 from Central African Republic, complete genome. 9028 bp DNA linear VRL 17-MAR-2003
Resource [1] Inoue J, Watanabe T, Sato M, Oda A, Toyoshima K, Yoshida M, Seiki M. Virology. 1986 Apr 15;150(1):187-95.
Nucleic acid sequence AF074966
Amino acid sequence
gene
gag-pro-pol
CDS Click for details
CDS Click for details
CDS Click for details
Graphical view

2061
AAAAAAC
TCCATA
GGGGGGGAGGTCTAACCTCCCCCCCCACATTACGGCAAGTCCTTCCC
Slippery sequence
AAAAAAC (2061 - 2067)
Spacer TCCATA (6 nt)
Stimulatory structure
GGGGGGGAGGTCTAACCTCCCCCCCCACATTACGGCAAGTCCTTCCC (2074 - 2120)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer

2588
TTTAAAC
CAGAAC
GCCTCCAGGCCTTGCAACACTTGGTCCGGACGGCCCTGGAGGCAGGC
Slippery sequence
TTTAAAC (2588 - 2594)
Spacer CAGAAC (6 nt)
Stimulatory structure
GCCTCCAGGCCTTGCAACACTTGGTCCGGACGGCCCTGGAGGCAGGC (2601 - 2647)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<