Overall information
FSDB ID PM1V0040 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Mink astrovirus, complete genome. 6610 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
[2] Mittelholzer C, Hedlund KO, Englund L, Dietz HH, Svensson L. J Gen Virol. 2003 Nov;84(Pt 11):3087-94.
Nucleic acid sequence NC_004579
Amino acid sequence
gene 
27..4171
/locus_tag="MaVgp1"
/db_xref="GeneID:1482922"
CDS Click for details
Graphical view

2549
TAAACTCAACCACACCATGTGGAAGAATGGGGTGGCTCCTTTCATGCAGAGGAAGAAGCAGAAGCC
AAAAAAC
GGGAAG
AGGGCCCCGAAAGGGGCCCAATAAACCCTGACGAGATGCGGCTTGACCACTGGGAGAAAATGATGGCCC
Stop codons TAA (2549),
Slippery sequence
AAAAAAC (2615 - 2621)
Spacer GGGAAG (6 nt)
Stimulatory structure
AGGGCCCCGAAAGGGGCCCAATAAACCCTGACGAGATGCGGCTTGACCACTGGGAGAAAATGATGGCCC (2628 - 2696)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<