Overall information
FSDB ID EM1E0002 Type -1 frameshifting
Data EXPERIMENTAL Kingdom eukaryota
Definition Mus musculus clone MIA14 full-length intracisternal A-particle gag protein gene, complete cds; and pol pseudogene, complete sequence. 7096 bp DNA linear ROD 05-APR-2002
Resource [1] Mietz JA, Grossman Z, Lueders KK, Kuff EL. J Virol. 1987 Oct;61(10):3020-9.
Nucleic acid sequence M17551
Amino acid sequence
gene 
594..3077
/gene="gag"
CDS Click for details
gene 
3041..5645
/gene="pol"
/pseudo
Graphical view

3038
TAATGGAAACCAAGACAGACAGGGTCT
GGGTTTT
CCTTAGCG
GCCATTGGGGCAGCACGACCCATACCATGGAAAACAGGGGACCCAGTGTGGGTTCCTCAATGGC
Stop codons TAA (3038),
Slippery sequence
GGGTTTT (3065 - 3071)
Spacer CCTTAGCG (8 nt)
Stimulatory structure
GCCATTGGGGCAGCACGACCCATACCATGGAAAACAGGGGACCCAGTGTGGGTTCCTCAATGGC (3080 - 3143)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<