Overall information
FSDB ID PM1V0034 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Human coronavirus HKU1, complete genome. 29926 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
[2] Woo PC, Lau SK, Chu CM, Chan KH, Tsoi HW, Huang Y, Wong BH, Poon RW, Cai JJ, Luk WK, Poon LL, Wong SS, Guan Y, Peiris JS, Yuen KY. J Virol. 2005 Jan;79(2):884-95.
Nucleic acid sequence NC_006577
Amino acid sequence
gene 
206..21753
/gene="orf1ab"
/locus_tag="HCHV1gp1"
/db_xref="GeneID:3200429"
CDS Click for details
Graphical view

13594
TTTAAAC
GGGTT
CGGGGTACTAGTGTGAATGCCCGGCTAGTACCC
Slippery sequence
TTTAAAC (13594 - 13600)
Spacer GGGTT (5 nt)
Stimulatory structure
CGGGGTACTAGTGTGAATGCCCGGCTAGTACCC (13606 - 13638)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<