Overall information
FSDB ID EM1E0003 Type -1 frameshifting
Data EXPERIMENTAL Kingdom eukaryota
Definition Human endogenous retrovirus HERV-K10. 9179 bp DNA linear PRI 13-FEB-1996
Resource [1] Ono M, Yasunaga T, Miyata T, Ushikubo H. J Virol. 1986 Nov;60(2):589-98.
[2] Wang Y, Wills NM, Du Z, Rangan A, Atkins JF, Gesteland RF, Hoffman DW. RNA. 2002 Aug;8(8):981-96.
Nucleic acid sequence M14123
Amino acid sequence
gene 
gag-pro
CDS Click for details
CDS Click for details
Graphical view

2910
TAAAAATGGGCAACCATTGTC
GGGAAAC
GAGCAAA
GGGGCCAGCCTCAGGCCCCACAACAAACTGG
Stop codons TAA (2910),
Slippery sequence
GGGAAAC (2931 - 2937)
Spacer GAGCAAA (7 nt)
Stimulatory structure
GGGGCCAGCCTCAGGCCCCACAACAAACTGG (2945 - 2975)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<