Overall information

FSDB ID	PP1P0047	Type	+1 frameshifting
Data	PREDICTED	Kingdom	prokaryota
Definition	Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome. 1864998 bp DNA circular BCT 13-JUN-2006
Resource	[1] predicted by FSFinder
Nucleic acid sequence		NC_008054
Amino acid sequence
gene	join(517909..517980,517982..519025) /gene="prfB" /locus_tag="Ldb0608" /db_xref="GeneID:4085100"
CDS	Click for details A Location is referenced by the ARFA's location. join(517909..517980,517982..519025) /gene="prfB" /locus_tag="Ldb0608" /function="3.7.5 Translation termination" /codon_start=1 /transl_table=11 /product="Peptide chain release factor 2 (RF-2)" /protein_id="YP_618696.1" /db_xref="GI:104773716" /db_xref="GeneID:4085100" /translation="MEISEIQNALDELRTRLNHFRGSL.. DFDNISESIEINEAKMAEPGFWDNQEKAQKLISETNLLKEKRDSFLALKK DLTDEETALELLRLEADADLQKDTEDQLAKLQEEFHQYELNLLLSGEYDD HNALMEIHPGAGGTEAMDWGNMLLRMYQRYCDSRGLKFEVNNFEPGDEAG LKSVSVRISGKNAYGLLKSEHGVHRLVRISPFDSAKRRHTSFASVEVIPE VDDSIEIDIDPKDLRIDVYRSSGAGGQHINKTSSAVRITHIPTGIVTTSQ AQRSQFQNRDTAMNEMRAKLFHLEEEKKRKEKAALKGEQLDIAWGSQIRS YVFHPYSMVKDHRTGYETADVGGVMDGKLDPFIYAYLQWRLSQENPE*"

Graphical view

517937 TAGACGAGTTGCGGACCCGGCTTAACCACTTCA GGGGG TCT CTTTGAC
Stop codons	TAG (517937),
Signal	GGGGG (517970 - 517974)
Slippery sequence	CTTTGAC (517978 - 517984)

Model

+1 prokaryote frameshift signal

FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)

Target gene

prfB gene

Sequence type

Full genome

Direction

+ strand

Signal

Match sequences

spacer

nt

Signal

Match sequences