Overall information
FSDB ID PM1E0007 Type -1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Drosophila melanogaster transposable element 297. 6995 bp DNA linear INV 18-APR-2005
Resource [1] Gao X, Havecker ER, Baranov PV, Atkins JF, Voytas DF. RNA. 2003 Dec;9(12):1422-30.
Nucleic acid sequence X03431
Amino acid sequence
gene
gag-pol
CDS Click for details
CDS Click for details
Graphical view

1996
TGAACTAAACGA
AAATTTT
CGGTTAACAG
TTCCGGAA
Stop codons TGA (1996),
Slippery sequence
AAATTTT (2008 - 2014)
Spacer CGGTTAACAG (10 nt)
Stimulatory structure
TTCCGGAA (2025 - 2032)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<