Overall information
FSDB ID PM1P0006 Type -1 frameshifting
Data PREDICTED Kingdom prokaryota
Definition Neisseria meningitidis serogroup B strain MC58 section 136 of 206 of the complete genome. 13001 bp DNA linear BCT 25-MAY-2000
Resource [1] Baranov PV, Gesteland RF, Atkins JF. Gene. 2002 Mar 20;286(2):187-201.
Nucleic acid sequence AE002494
Amino acid sequence
gene 
78..2192
/gene="NMB1443"
/note="This region contains an authentic frame shift and
is not the result of a sequencing artifact; similar to
GB:M38777 SP:P06710 GB:X04275 GB:X04487 PID:145297 percent
identity: 59.35; identified by sequence similarity;
putative"
CDS Click for details
Graphical view

1193
TGAAAATACCGAACTAAAATCCCCATCGGCACAAACCGCCGAAAAGGAAACCGCCGC
AAAAAAG
CCCCAACCGC
GCCCTGAAGCGGAAACCGCCCAAACACCCGTTCAGACGGC
Stop codons TGA (1193),
Slippery sequence
AAAAAAG (1250 - 1256)
Spacer CCCCAACCGC (10 nt)
Stimulatory structure
GCCCTGAAGCGGAAACCGCCCAAACACCCGTTCAGACGGC (1267 - 1306)

Referenced structure by Gene (2002) 286, 187-201
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene dnaX gene
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<