Overall information
FSDB ID PM1V0059 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Turkey astrovirus 2, complete genome. 7355 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_005790
Amino acid sequence
gene 
21..3398
/locus_tag="TAV2gp1"
/db_xref="GeneID:2943321"
CDS Click for details
gene 
3353..4936
/locus_tag="TAV2gp2"
/db_xref="GeneID:2943319"
CDS Click for details
Graphical view

3350
TGAGAAGTTAGAAGATCATGTGGTCAGTGGAGAGTGTCA
AAAAAAC
TAATAG
AGGGGCCTGTGACAACAAAGGCCCCTACCCCC
Stop codons TGA (3350),
Slippery sequence
AAAAAAC (3389 - 3395)
Spacer TAATAG (6 nt)
Stimulatory structure
AGGGGCCTGTGACAACAAAGGCCCCTACCCCC (3402 - 3433)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<