Overall information
FSDB ID EP1E0006 Type +1 frameshifting
Data EXPERIMENTAL Kingdom eukaryota
Definition Mus musculus ornithine decarboxylase antizyme 2 (Oaz2), mRNA. 1813 bp mRNA linear ROD 07-MAY-2006
Resource [1] Ivanov IP, Gesteland RF, Atkins JF. Genomics. 1998 Sep 1;52(2):119-29.
[2] Ivanov IP, Matsufuji S, Murakami Y, Gesteland RF, Atkins JF. EMBO J. 2000 Apr 17;19(8):1907-17.
Nucleic acid sequence NM_010952
Amino acid sequence
gene 
1..1813
/gene="Oaz2"
/note="synonyms: AZ-2, Sez15"
/db_xref="GeneID:18247"
/db_xref="MGI:109492"
CDS Click for details
Graphical view

189
TGAGTAAGTGTCCCCAGCTCCAGTGCTGCAGGCACATTGTTCCAGGGCCTCTGTGGTGC
TCCTGA
TGCC
CCTCACCCACTGTCGAAGATCCCCGGTGGGCGAGG
Stop codons TGA (189),
Slippery sequence
TCCTGA (248 - 253)
Spacer TGCC (4 nt)
Stimulatory structure
CCTCACCCACTGTCGAAGATCCCCGGTGGGCGAGG (258 - 292)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model +1 eukaryote frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene oaz gene
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<