Overall information
FSDB ID
PP1P0037
Type
+1 frameshifting
Data
PREDICTED
Kingdom
prokaryota
Definition
Shigella flexneri 5 str. 8401, complete genome. 4574284 bp DNA circular BCT 28-JUL-2006
Resource
[1]
predicted by FSFinder
Nucleic acid sequence
NC_008258
Amino acid sequence
gene
complement(3007703..3008801)
/gene="prfB"
/locus_tag="SFV_2939"
/note="frameshift; original product: peptide chain release
factor RF-2"
/pseudo
/db_xref="GeneID:4209170"
CDS
Click for details
Graphical view
3008781 TAAATAATCGCATTCAGGACCTCACGGAACGCTCCGACGTTCTTA
GGGGG
TAT
CTTTGAC
Stop codons
TAA
(3008781 ),
Signal
GGGGG
(3008736 -
3008732)
Slippery sequence
CTTTGAC
(3008728 -
3008722)
Model
+1 prokaryote frameshift signal
FSFinder parameters
Run FSFinder (You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene
prfB gene
Sequence type
Full genome
Direction
- strand