Overall information
FSDB ID EM1V0003 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Bovine leukemia virus complete genome. 8419 bp RNA linear VRL 17-FEB-2004
Resource [1] ten Dam EB, Pleij CW, Bosch L. Virus Genes. 1990 Jul;4(2):121-36.
[2] Sagata,N. et al.(1985). Proc.Natl.Acad.Sci.USA 82, 677-681.
[3] Rice,N.R. et al.(1985). Virology 142, 357-377.
Nucleic acid sequence AF033818
Amino acid sequence
gene 
join(418..1546,1546..2132,2132..4666)
/gene="gag-pro-pol"
/product="RT-IN"
CDS Click for details
Graphical view

1545
TAAAGATCCTTCCCATTGGAAACGAGACTGTCCAACCCTCAAATC
AAAAAAC
TAATAGA
GGGGGGACTTAGCGCCCCCCAAACCGT
Stop codons TAA (1545),
Slippery sequence
AAAAAAC (1590 - 1596)
Spacer TAATAGA (7 nt)
Stimulatory structure
GGGGGGACTTAGCGCCCCCCAAACCGT (1604 - 1630)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<