Overall information
FSDB ID PM1E0003 Type -1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018A10, complete sequence. 134414 bp DNA linear PLN 16-APR-2005
Resource [1] Escherichia coli insertion sequence IS150: transposition via circular and linear intermediates.
Nucleic acid sequence AL662999
Amino acid sequence
gene 
IS 2
Graphical view

52221
TGAATATGGACGGGC
AAAAAAG
TGGATA
GCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGC
Stop codons TGA (52221),
Slippery sequence
AAAAAAG (52236 - 52242)
Spacer TGGATA (6 nt)
Stimulatory structure
GCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGC (52249 - 52320)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<