Overall information
FSDB ID EM1V0002 Type -1 frameshifting
Data EXPERIMENTAL Kingdom Viruses
Definition Berne virus mRNA for polymerase. 7920 bp RNA linear VRL 10-FEB-1999
Resource [1] Snijder EJ, den Boon JA, Bredenbeek PJ, Horzinek MC, Rijnbrand R, Spaan WJ. Nucleic Acids Res. 1990 Aug 11;18(15):4535-42.
Nucleic acid sequence X52374
Amino acid sequence
CDS Click for details
CDS Click for details
Graphical view

1042
TGA
TTTAAAC
TGTTG
AGAGGTGCCTGGAGCGCCTGCAGGCATCTCTGTT

1150
TATAATGCAGGC
Stop codons TGA (1042),
Slippery sequence
TTTAAAC (1045 - 1051)

TATAATGCAGGC (1150 -1161)
Spacer TGTTG (5 nt)
Stimulatory structure
AGAGGTGCCTGGAGCGCCTGCAGGCATCTCTGTT (1057 - 1090)

TATAATGCAGGC (1150 -1161)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<