Overall information
FSDB ID PM1P0005 Type -1 frameshifting
Data PREDICTED Kingdom prokaryota
Definition Salmonella typhi SopE (sopE) gene, complete cds; and unknown genes. 4938 bp DNA linear BCT 10-SEP-1999
Resource [1] Christie GE, Temple LM, Bartlett BA, Goodwin TS. J Bacteriol. 2002 Dec;184(23):6522-31.
Nucleic acid sequence AF153829
Amino acid sequence
gene
orfH
CDS Click for details
Graphical view

3430
TGAAATTACCGAAATTGTGCTGCGCAAGCCTCAGTCCGGCGCGCTGCGTGGCACCCGTCTGCAGGCCATTATGGATATGGACGTGGGCGCGATGATGACTGTGATCCCGCGAATCTCTTCCCCGACGCTGACCGCGCAGGAAATGGCAGAGCTGGACCCCGCCGATCTGACAGCAATGGCTGTAGAGGTGGTGAC
TTTTTTG
TTGCCGAA
GTCGGTGCTTGCCGATTTGCCGACAACCTGACGGTTGATGATCTGGTGGCAGACATTGCCACC
Stop codons TGA (3430),
Slippery sequence
TTTTTTG (3625 - 3631)
Spacer TTGCCGAA (8 nt)
Stimulatory structure
GTCGGTGCTTGCCGATTTGCCGACAACCTGACGGTTGATGATCTGGTGGCAGACATTGCCACC (3640 - 3702)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<