Overall information

FSDB ID	PP1P0002	Type	+1 frameshifting
Data	PREDICTED	Kingdom	prokaryota
Definition	Haemophilus influenzae Rd KW20 section 115 of 163 of the complete genome. 10411 bp DNA linear BCT 02-JUN-2004
Resource	[1] Persson BC, Atkins JF. J Bacteriol. 1998 Jul;180(13):3462-6. [2] Baranov PV, Gesteland RF, Atkins JF. EMBO Rep. 2002 Apr;3(4):373-7. Epub 2002 Mar 15. [3] Baranov PV, Gesteland RF, Atkins JF. Gene. 2002 Mar 20;286(2):187-201.
Nucleic acid sequence		U32800
Amino acid sequence
gene	complement(8319..9417) /gene="HI1212" /note="This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to GB:U00096 PID:2367172 percent identity: 81.97; identified by sequence similarity; putative" /pseudo

Graphical view

1014 TAAAAAATAAAATCATCGATTTATCTGACCGCACTTCAGTGCTTC GGGGG TAT CTTTGAC
Stop codons	TAA (1014),
Signal	GGGGG (1059 - 1063)
Slippery sequence	CTTTGAC (1067 - 1073)

Model

+1 prokaryote frameshift signal

FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)

Target gene

prfB gene

Sequence type

Patial genome

Direction

+ strand

Signal

Match sequences

spacer

nt

Signal

Match sequences