Overall information
FSDB ID PM1P0004 Type -1 frameshifting
Data PREDICTED Kingdom prokaryota
Definition Yersinia pestis KIM section 109 of 415 of the complete genome. 13202 bp DNA linear BCT 26-JUL-2002
Resource [1] Baranov PV, Gesteland RF, Atkins JF. Gene. 2002 Mar 20;286(2):187-201.
Nucleic acid sequence AE013709
Amino acid sequence
gene
8024..10000
/gene="dnaX"
/note="synonym: y1060"
CDS Click for details
Graphical view

9199
TAGGCAGGAACCCGCATCAGTACCGCCGAGTTCCCATCAAGAGGCTCCGCCGTTAGGTGCTGTAGCGTCCAGCGTCCAACTTCCGGAATCGACAGCGCAATTGCTTCAGGCGCGTACGCAGTTACTGCGACAGTCGGGGACGACCACAAC
AAAAAAG
AATGA
GCCGGCGGCGCCAGGAAAAGCGCGGCCGGC
Stop codons TAG (9199),
Slippery sequence
AAAAAAG (9349 - 9355)
Spacer AATGA (5 nt)
Stimulatory structure
GCCGGCGGCGCCAGGAAAAGCGCGGCCGGC (9361 - 9390)

Referenced structure by Gene (2002) 286, 187-201
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene dnaX gene
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions