Overall information
FSDB ID PM1V0049 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Rabbit fibroma virus, complete genome. 159857 bp DNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_001266
Amino acid sequence
gene
135538..136209
/locus_tag="SFV_s141R"
/db_xref="GeneID:1486982"
CDS Click for details
gene
136203..137123
/locus_tag="SFV_s142R"
/db_xref="GeneID:1486983"
CDS Click for details
Graphical view

136185
AAATTTA
ATCATAATA
CCATGTTAAAGCGAAACGGGATAGAGCCAGGGGACGCGTTAACCGATTCGTCGAAACGGGAATGG
Slippery sequence
AAATTTA (136185 - 136191)
Spacer ATCATAATA (9 nt)
Stimulatory structure
CCATGTTAAAGCGAAACGGGATAGAGCCAGGGGACGCGTTAACCGATTCGTCGAAACGGGAATGG (136201 - 136265)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<