Overall information
FSDB ID PM1V0037 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Human herpesvirus 3 (strain Dumas), complete genome. 124884 bp DNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_001348
Amino acid sequence
gene
83168..84700
/locus_tag="HHV3gp48"
/db_xref="GeneID:1487678"
CDS Click for details
gene
84667..86322
/locus_tag="HHV3gp49"
/db_xref="GeneID:1487679"
CDS Click for details
Graphical view

84634
TAATTCAGAAATACGCTCGGATCA
CCCTTTA
TTAT
GGCACGATCGGGATTGGATAGGATCGACATAAGCCCCCAGCCAGCCAAAAAAATTGCCCGTG
Stop codons TAA (84634),
Slippery sequence
CCCTTTA (84658 - 84664)
Spacer TTAT (4 nt)
Stimulatory structure
GGCACGATCGGGATTGGATAGGATCGACATAAGCCCCCAGCCAGCCAAAAAAATTGCCCGTG (84669 - 84730)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<