Overall information
FSDB ID EP1E0001 Type +1 frameshifting
Data EXPERIMENTAL Kingdom eukaryota
Definition Drosophila melanogaster ornithine decarboxylase antizyme mRNA, complete cds. 1654 bp mRNA linear INV 22-DEC-1998
Resource [1] Ivanov IP, Matsufuji S, Murakami Y, Gesteland RF, Atkins JF. EMBO J. 2000 Apr 17;19(8):1907-17.
[2] Ivanov IP, Simin K, Letsou A, Atkins JF, Gesteland RF. Mol Cell Biol. 1998 Mar;18(3):1553-61.
[3] Salzberg A, Golden K, Bodmer R, Bellen HJ. Genetics. 1996 Sep;144(1):183-96.
Nucleic acid sequence AF038597
Amino acid sequence
gene
oaz gene
CDS Click for details
Graphical view

310
TAGGGCCTCTGTGGTGG
TCCTGA
TGTCC
CTGTCCACCACAGAACAGATCACGATAGGGCATCGCTCTTAACGGGCTACAGCCGTAAGTCTTCGGTCGACTCGGCTGGTGG
Stop codons TAG (310),
Slippery sequence
TCCTGA (327 - 332)
Spacer TGTCC (5 nt)
Stimulatory structure
CTGTCCACCACAGAACAGATCACGATAGGGCATCGCTCTTAACGGGCTACAGCCGTAAGTCTTCGGTCGACTCGGCTGGTGG (338 - 419)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model +1 eukaryote frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene oaz gene
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<