Overall information
FSDB ID PM1V0064 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Enterobacteria phage HK022 virion, complete genome. 40751 bp DNA linear PHG 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_002166
Amino acid sequence
gene
7797..8282
/locus_tag="HK022p13"
/db_xref="GeneID:1262471"
CDS Click for details
gene
8129..8458
/locus_tag="HK022p14"
/db_xref="GeneID:1262489"
CDS Click for details
Graphical view

8120
TAACGATCT
GGGAAAG
ACTT
CGAGCTCAGCGCCGAAGACGAATTCTGGTGCGAGCTCG
Stop codons TAA (8120),
Slippery sequence
GGGAAAG (8129 - 8135)
Spacer ACTT (4 nt)
Stimulatory structure
CGAGCTCAGCGCCGAAGACGAATTCTGGTGCGAGCTCG (8140 - 8177)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<