Overall information
FSDB ID EM1V0038 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition White bream virus, complete genome. 26660 bp ss-RNA linear VRL 25-OCT-2006
Resource [1] Schutze H, Ulferts R, Schelle B, Bayer S, Granzow H, Hoffmann B, Mettenleiter TC, Ziebuhr J. J Virol. 2006 Dec;80(23):11598-609.
Nucleic acid sequence NC_008516
Amino acid sequence
gene 
906..21523
 /gene="pp1ab"
 /locus_tag="WBV_gp1"
 /note="ORFs 1a and 1b"
 /db_xref="GeneID:4443112"
CDS Click for details
Graphical view

14486
TAACAAGTTCACATGCACAACATGTCAACCATTGCAACAACAATCAAAAACACAGCAGCCGCC
TTTAAAC
TGGT
GGGGCAGTGTCTAGGATTGACGTTAGACACTGCTTTTTGCCCGTTTCAAACAGGTGAATACAAACCGTCA
Stop codons TAA (14486),
Slippery sequence
TTTAAAC (14549 - 14555)
Spacer TGGT (4 nt)
Stimulatory structure
GGGGCAGTGTCTAGGATTGACGTTAGACACTGCTTTTTGCCCGTTTCAAACAGGTGAATACAAACCGTCA (14560 - 14629)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<