Overall information
FSDB ID PM1V0062 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Mycobacteriophage Halo virus, complete genome. 42289 bp DNA linear PHG 22-JUN-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_008202
Amino acid sequence
gene 
10576..11471
/locus_tag="Halop15"
/db_xref="GeneID:4157097"
CDS Click for details
Graphical view

10656
TGAGCACGCCGGATTCGAGGGAACCGACACCGCCGAACCGTCGACGTCGGATCCCGAACTGTCCATCGTCGAAGAGTGGGGCGGCGACTACCCGCCCGGTACGGCGTTGTTCTGCGCGAAGTTCGACGCCGACGACTTCGACGCCGACTGGGGCGAAGACGAGTTTCCCGACGGCGCGACCGTCGCGATCCGTCGAGGGTCCGGCGTTCCTCCGCAGGGCTGGATCATCCGGCACGCGCACCTGTCCGACCTCGAACGGACGAAGGCCATCCTCGAGAAGCACGCGTCGCCGGACGCGTTGCGAATCCTCTGCAGCCTCAAGGACGCAGCATTCGACGCGTTCGTCGAGGCGTGGGGGAAGGACGGTGGCATGGTACC
GGGAAAA
TCGA
ACAGGTCTGCGCGGCGATCCGCCAGCACGAGGCGGCGGTAAGGCGTGACGTGATTGCGTTGGGGTCCGGCCTACGACTCGACGACGG
Stop codons TGA (10656),
Slippery sequence
GGGAAAA (11034 - 11040)
Spacer TCGA (4 nt)
Stimulatory structure
ACAGGTCTGCGCGGCGATCCGCCAGCACGAGGCGGCGGTAAGGCGTGACGTGATTGCGTTGGGGTCCGGCCTACGACTCGACGACGG (11045 - 11131)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<