Overall information
FSDB ID EM1V0008 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Feline immunodeficiency virus complete genome. 9474 bp ss-RNA linear VRL 04-MAR-1996
Resource [1] ten Dam EB, Pleij CW, Bosch L. Virus Genes. 1990 Jul;4(2):121-36.
[2] Talbott RL, Sparger EE, Lovelace KM, Fitch WM, Pedersen NC, Luciw PA, Elder JH. Proc Natl Acad Sci U S A. 1989 Aug;86(15):5743-7.
[3] Phillips TR, Talbott RL, Lamont C, Muir S, Lovelace K, Elder JH. J Virol. 1990 Oct;64(10):4605-13.
Nucleic acid sequence M25381
Amino acid sequence
gene 
628..1980
/gene="gag"
CDS Click for details
gene 
2251..5243
/gene="pol"
CDS Click for details
Graphical view

1866
TAGAAAGAATTC
GGGAAAC
TGGAAGGC
GGGGCGAGCTGCAGCCCCAGTGAATCAAATGCAGC
Stop codons TAG (1866),
Slippery sequence
GGGAAAC (1878 - 1884)
Spacer TGGAAGGC (8 nt)
Stimulatory structure
GGGGCGAGCTGCAGCCCCAGTGAATCAAATGCAGC (1893 - 1927)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<