Overall information
FSDB ID PM1V0039 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Lumpy skin disease virus NI-2490, complete genome. 150773 bp DNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
[2] Tulman ER, Afonso CL, Lu Z, Zsak L, Kutish GF, Rock DL. J Virol. 2001 Aug;75(15):7122-30.
Nucleic acid sequence NC_003027
Amino acid sequence
gene 
28590..29798
/gene="LSDV035"
/locus_tag="LSDVgp036"
/db_xref="GeneID:921583"
CDS Click for details
gene 
29807..31507
/gene="LSDV037"
/locus_tag="LSDVgp037"
/db_xref="GeneID:921596"
CDS Click for details
Graphical view

29765
TGATACTTGTTTGACTATAGC
AAAAAAC
AATTAA
CAACTAACATGGATTTTATACGAAGAAAGTATTTAATATATACAATAGAAAACAAAGTTG
Stop codons TGA (29765),
Slippery sequence
AAAAAAC (29786 - 29792)
Spacer AATTAA (6 nt)
Stimulatory structure
CAACTAACATGGATTTTATACGAAGAAAGTATTTAATATATACAATAGAAAACAAAGTTG (29799 - 29858)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene other genes in bacteria
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<