Overall information
FSDB ID EM1V0032 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition SARS coronavirus, complete genome. 29751 bp ss-RNA linear VRL 20-JUN-2006
Resource [1] Thiel V, Ivanov KA, Putics A, Hertzig T, Schelle B, Bayer S, Weissbrich B, Snijder EJ, Rabenau H, Doerr HW, Gorbalenya AE, Ziebuhr J. J Gen Virol. 2003 Sep;84(Pt 9):2305-15.
Nucleic acid sequence NC_004718
Amino acid sequence
gene
265..21485
/gene="orf1ab"
/locus_tag="sars1"
/db_xref="GeneID:1489680"
CDS Click for details
Graphical view

13344
TGACCAACTCCGCGAACCCTTGATGCAGTCTGCGGATGCATCAACGTT
TTTAAAC
GGGTT
TGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCACTAGTACTGATGTCGTCTACAGGGCT
Stop codons TGA (13344),
Slippery sequence
TTTAAAC (13392 - 13398)
Spacer GGGTT (5 nt)
Stimulatory structure
TGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCACTAGTACTGATGTCGTCTACAGGGCT (13404 - 13472)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<