Overall information
FSDB ID PM1V0003 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Simian immunodeficiency virus, complete genome. 9623 bp DNA linear VRL 26-APR-2001
Resource [1] Franchini G, Gurgo C, Guo HG, Gallo RC, Collalti E, Fargnoli KA, Hall LF, Wong-Staal F, Reitz MS Jr. Nature. 1987 Aug 6-12;328(6130):539-43.
Nucleic acid sequence M66437
Amino acid sequence
gene 
897..2438
/gene="gag"
CDS Click for details
gene 
2141..5314
/gene="pol"
CDS Click for details
Graphical view

2192
TTTTTTA
GGGT
ATGGCCATTGGGGAGGAGCGAAACCAAGAAATTTTGTGCAATACAGAGGAGACACAGTTGGTCTGGAACCAA
Slippery sequence
TTTTTTA (2192 - 2198)
Spacer GGGT (4 nt)
Stimulatory structure
ATGGCCATTGGGGAGGAGCGAAACCAAGAAATTTTGTGCAATACAGAGGAGACACAGTTGGTCTGGAACCAA (2203 - 2274)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<