69..12251
/gene="ORF1a"
/note="relicase polyprotein; contains a 3C-like cysteine
proteinase"
/codon_start=1
/product="ORF1a polyprotein"
/protein_id="AAF82689.1"
/db_xref="GI:9082017"
/translation="MEPFEVLLLLATSLSLFLLLRILDRGTTVLSAVRLTLRTTFFNE
SVRSSLEWTSPARWFDSSSKTTTRMDKRSIRSVKLTSAHGSQYPSVVTLTVLANDAYD
ARAFFRSNQHAAQTIFWFGALFNAGLVLCGIVLSLPALTYILVARLTTRLRDFLVAVG
ATRSSENTSCSHEKTHALKSSVRSSMINLQSLVRRVGPLLPIVTIMCCTPPTDAFEIT
IAPRVTLDTGLSAISLLITATWLIRQIQLSQVRPEMNSSLSTVVGLITIIFLSCITIV
GGITAPTNPSRIGHGMIAPFLLFIVMWLSLRYLLTISLRLFPKQLLKYYTRNDFHLYF
LFSYQHHLPEVTLKKGIISNGAYTDHYHTTTKFCNGCVGFGHLDSECSKYTHTVFSYK
RYYNIPSGQPVEAYLEVHTQNEIFTYNDTVIIRGDLVFINKTLKDYDHTTLGPLHPED
FPHLAVRRVDYMPVVNVDGTIRIFPNTKYYNHTEYTLDKESDIDTAHYQTIYRQTTPF
KIDYDIPCGIIPHPDTTIVHTQGYVNSHVEIDTSSVNDNISLRPNSTTFSCSQSSSSA
ASTFSSSSSIPASSANSLAQKSTKDQVFNYMSIRPKRIYNSSTDPIASLLPVPSNADP
YSHVYPVELQYAFPGWTADEIVNDADGITIHEYTSCKQTTKDFLRTIDPQKFSAHVNT
RSTPTFVTLHNGCIWNTNDPIIDIGIASANRPDGVSQMIPDMTNAYNVPPPARRLGSY
TKSGRVFCIWGARVNTAPTPCKHVNSCYCLDTKYHRYNAFYNAVSTIINREQLTMVSM
SLNVGCGPLQGDWHTYEQIIFRVANETQCYIRIYMNNETGAHHNPLTNQTGKNRKKWH
VYKVQETKLPINKTLRSVNVSQAQRKREQTRHTLSTLTPITPHKNTIPELDEVPQNFV
EHCHLFYKQRHAQITNLLSLCLGIIIHHYIYDIIHGLRVIEYLEIIIMCTIFTITVIS
SHNYKITTASVTLAGTLAGNNPVTWICFALAHKHSMRFSLQILGILNAINPYSAYTGT
LCFLFYTLSPSTCTSLIRFTLTLLLTVTGAQAHETTHESDTKHIFTHFTRLIVYALCA
HIIYTIVKMLEPREEHETVSCSTTQTSNFRSTHRRTTTCAYTQPTTPAVVIVVALTLT
LIVSTANAHQIFSRDPSHKFYSYYEPIEDCADPAYIGQIDYDRFWKMPSTFQFPNGMT
LEDYLMEEVCYDESILDLMHPVYVIEGIPLEVTQAISCDHHLRVNKTQLSYCLEERVS
EEDMTLMTQAQLKKFALKYKRRADQDTPISHTVQTINIVGITLTYRSNHTYTLPYGTL
TCNSEHAYCSYIAKVLGSEHDLPSSALQYCHGNEDFCEYKRFNDADLCTLYYRDLTIA
PDTDPEDFKLAQQFREHVASLCGIRARLHTSDGTPTPTVRRGEWYATTLRIASHRSRN
TQCIVNVCGAVPADFLDQGIPFDYQFVNDCSPSNTTADCVAIDFAYEFAYSYIHKKVM
HNGHVPYITRIMNIIPDIPEAYSRLAAIYNAVVNIPSEEIVDRLYEQVDNTAQLATRR
LESIMHVPKMVKTTAEALFAERIVKKYTLVGIRELCLARFEESVCRRLIIAVNGFINN
DHLIIETDLDKSTFTALYHFITKHYNTKYTAPQPVCKTLKNMTPTQRYISDCDTQLEL
GPKHINFVEGQVDYTRRNITILHNVPTSQIDVIFTTTGTEYYDSNEHQFAVITDKRYT
INSTTYTLPSDLTLRAQNRNKQSRHWHNYGHRFYNAELIKPGTNRGHMIPSFLGGPAV
YANAFLQTIQANLDDTTYENQAINAVYNKRIVSYYPNDIIIGDASDPWCYINPSTSPS
PTLALPRSVSEAETFILTHGNIYTVTHDHPYHTEEEFKLIRSLALPCGVYSYAISLNG
ETVRRWNPSDQTGGKTLLHHPINTTHIRTWELATNTLKTAITAVAKLRHPALATLGLS
PDFIATAHPLHIRNTLGSLYTHRHLAYLLPIALRCASGVAVNFGVNTPLNCTSDKGYG
INQSGLPSLEHNTQNFTAINTEIPTTYTLSGDVRDMTCLYNSIRLWADSNGYSTSFTD
TADITFRFNNSVPSTRCYSYKIPPTHACDSPTYDIPHEDLTYYQQAALAVICKGHNNM
YCQQLDIDSYPRPTYSEFMDNLLNLTCGTFNITDSVQCCASQYQIIHIPPQDYNTTLT
QLAHTHMHCPVYIEQSDDINNSSSGLYTYSYGGRVIGSSDTLGVARLPSDILILYKNI
TEVRFNTNTQLCHSDGNNTLFHNGCNLNISHGTPSEPLYTTYPDKHHDIIQAQLTQDI
LNTLINTTGSLNIMKYRRSALNLTFPNHPVDIKVEQIDGCHIIGETVLEQYNRDYQIT
YEYPALDDVLEITVPNNFAMEQFYRSALSHCYQLRFIYTDKVININPSHTTNNCLYLT
KIADIQVSGSFCDYALPFKFYTTSNERCHNYIRNLMEIYGVRGIDLPLGFLDKVECTN
IEDTKIEIISDKWGNDTFIHPGSARDTWGHNVVVNEYTTEGALIKSQVYNQSYFSFLG
GRVYRDNTYCLARPYETMSVYITPICSSSSPSRWSLLYNIPLTYFHHAQASYHDTLDH
SSVYSLMIIIVSYFLLTRFFEPVTVCFIYILITNVFALIIYQSRDLAYISSVIAAFFG
TLTAVLQRCMVIPTVLSFLFTMTSYCKKGSMMKRPRDHFDMFVATSFMAFSLINIGYI
FLLTGIVIFIGLYKFIVSQFTQAHWRTYVNVAVGIEDIAALGYTQTNQVRKAADELMK
KSTDDKYSYYQQLDAFVHAAFLNAYAQAIDSKIPLNFTHRNLNFRVSQPKTNFLVGLV
THEVRTGNATTVEDLNKHPYNKYRKNIVRVYGERGDLNGFLSGKSLHFPRHIFDTCTD
NTLTRHIRVTKGEETHDIELLSEEYDATPFIKVESPFAEATELKFAKLQRTQHVYFVT
ADDIRLGSMSTDGYHNISTKDGDCGSIIFDHLGNVVGAHIVGISCIPPVNGALTWNPE
TELLCGPNADYDFDPTKVDPPKVWPVEPVTALSTVLNQLNYVTGDAFTTPKLPTNYQL
VGCETLDQYVNACNLVTGQFPQIKEALDDFINGYVANLQRGAEAYNTIYASMSAQIRI
ADLSPLSNSITNWQYLIDPLTRFRCFILGLIRQYMRHCIIYILLQFAFICFDHGFFFR
VLRDPTHFFLSILSTVFISISPIASTSAIFVKYLLSYTLEYRYAYLNIDTLIQSYLYL
SSREAIFYTSRRVNKFCTALTVIVMLCVDTFFVEIGGYNVLPVLIVCIPIFYLRTIMM
GAAQVQVYFEADLHKPAANFMTFIYFLIINAFSIIIYCWGLFSFNPYANTILLLTTVI
HFIAFYVLSQEVQKVFESNTFRIPRLVYAILSYASHILCHIYSTSLNKVCEWILRALI
HADRSIIIGVGALCLFLLICLFLIFCRSSNTVKHESNDIKDAHTRFDSFAKLTTLIAN
NPKLACMKPLCVDYNDNRARMTLKEKGNWVIKVRDALLTQFSLSNPADLADVIHECAS
HPTLNKLFFDSSKGLKVYHEIDFKIDHAPYTGDDEQIRADTALLAEYRNELNLIEWKI
VTSQKELSDAKSAEDKEKVKFINTQLADLMKQRKTLITISNTLNQSIMARDAKNRRTA
KRHANEEANEIARVIKAQRLRDSLTLIFNTFINNLIKLTSDCNALKSYADNVLKYVPE
ETKDFLKRADNCYRLSQDLILIETPASPLSYFKEKNGIIEVTNSCSYDTFKDGMVVNH
ILDGTTKLPYTLDSLKSSTRVVCYEPDSSTSRQDTCTHDVNAKVGQILPCGTALECKH
QHYHNQFDCTSGYFAFMAQHVTECETCLDIFKRGHCGCGYRYKVPRVLQSFILHGSKC
SHVTHELSYSGTAAAFKPYYDEATGGIMYKSAVIAYLKKPDVYTSTFTYNNETYYLPV
PLTHDIVSILIAFAIRNGSIPVGEAQFEACFDRVDVDEDSNLQSYSLTDTPCANDDQI
CYQIQKCPFHNTKDSACMICANLDDGIYSIVPAESSFHELAKELSITLTNVTTPIPVK
HEANFQTKPRRVFQ"

12149..20089
/gene="ORF1b"
/note="contains RNA polymerase, zinc finger and helicase
motifs"
/codon_start=1
/product="ORF1ab replicase polyprotein"
/protein_id="AAF82690.1"
/db_xref="GI:9082018"
/translation="IGERTLHHTHKRHHSHPSQARGKFSDKASSSLPVNRYHYINSAP
FNYTITNKSPGDGWVEFTGDNHEACIGHKIWAKKYYHTSGIFCKPRASSSTLIINGKN
RHYKTKHSLTREIKIAQTLSHIPEAIQFKKDSHGYYREISQFSLADVLHGFANQIEPD
FLAKYTNERNIKVSKTTWLCKNICNHKSCNILKMDIFDYTYTCYTKAHSFALQACSTY
NFDITPDNICPEGVYDFETFRIGTRDPIKALNAVFYCIERHWFFSGLSISCASIYPNA
NMTIHQYKEAFNLYTNELATEVTLKHQPTFDSYLSFMLTKERHNINIDIGTGANTFYT
SFDTINSAPCTDERYEEVMIGVTRLYYAYQYDRGDFPCKYTVTQTHIKYPVIGDVAVE
PEECSYPTCNGYPPVYSALVSIQKFTTWARLMGYNVLKRVFNHCRNCEHLNCKISRQL
ARFKNPLSNIQPVAYTKLHEDRHLIRDRLTHMDFTSGQEFYAAEFIKEFNDIEFTTTH
GDKLHFNLTHPYDALLEPLLPSNTLVGNSVAASGVISDLDDNFKNYDRNTGISCSLTE
FQLSLSHILYRSESQRTSDDHLDLTPYEDTKKPASKKSSGIGITKLPQGYIRSLSDNT
SFITAQIEHIKHHFSVWLFEVIPKISIQPVDKALRSIFIGPAFMNDVYRCFNTAWLEF
TKTRLSYNTVLIGFKDTHCGINKLINGIKAGFNPKGKSKWISQDYPKFDTCVDTMAQY
SYIVNHAYHYTHTNLSLIVRGLCQLIANSTSPIIYYNSILIRKLHGVSSGDGATAIKN
SHCNSVITNIAFYRQIVDNQVPEEYRGLQSTLYTTLINGIHSKDDAYSTHRAFEWNIS
RCATLSDDTLAIINPDVLDLDQYLSSYRTLGGYEITNEKKIFVRDEPYEFTFRYFFKE
DGFWYNAPLIERVFSSIVQCSKATSLCPEIMAGRLLSILINAWPLTRTDNTLDDVPVK
DIIMALYKITKNYIDKHSIFYTTALIDFDFDDERISNIGRAALDHIGHTKKFIDIDYL
DNVWFKQPEMDLAVCHESTTQHSHHPNHEYISVPSNVDTIIGDITIITDGITVQAVSR
TGKKPHGLSASFAAQGRNAYNVSHKSRSSYTVDGNVRHIWALTYPGKATGDYDEHLVR
LHRLIASLSAIIHTENPSQIYIPWNILCGLGGGNWNMVYQALITFAKFNKDTRFIFVK
LNTTHEGTRDICFACGGHGQFECYTCASNGYPFTFCNGSTCLRTHFTECEHYSYSLAS
RKRYIIQCADCEEMDIRKMYVNNDFRCARHLHTEGYSKITDDKNNVTIFRTAATRSEL
PGVSKILKQVRDKNFFKTIYEFTLKHWIQHNIILSFIATREDMPSEVIDFNVLRQEND
KTYIKADKFFSFKINNKYIDATTLQDIALKQEYTNGKLSLFIDGGVKKGVKTIKITTP
NPSNSLTLWNSISPITPVLNVFRGIQQQVSTYSIDDTGSLLDKMANNNITVIQGPPGT
GKTYTINRFLTKINEILPNSNIAVLASSHSAVDNIGNSVNPSIFRRCKRLIPQESEEK
VRTRFQRYTTGGGIIFATLQSTRGILCPSVEYMIIDEFSMATDIQIYSAICHLNPRHI
IFTGDPCQLSTQHVYNTDVYHSNIINNHQLTGKFPTEFLDITYRMGSKINDFISENFY
DGKLKTAATYEGEVFQLHLDPINMLSQIHAIWESSAQNNFAILVTHHEAFSIIRQYFT
DIDIQIPIYTVHTSQGRTFDRGIVVSYRNTAFTRDPNIVNVAVSRFRFQCICMHQGNP
YYSKLPYYNTAQIYFEKSTTVIAYNGPNNKLSNMYTDNLKPFPYHTLENRYQSEKAKY
LGKKLILHNNPFETLKEAKKVFTREDNKIWAKVSAEVMTRLLFEKFNNPELSKHLINT
GKSHLVENTQHPIWGGKGRGENLHGKILTNIRAKLEVRLREPDLVDTSYKHNIIFQKF
KHQIISSPRLDIHENTLCIDVETVNSKDIKGTDNKSLHFPSQIGFAYNGTTDTYDCTP
TLTVNGHSITTKHYTSIYPSSVKAAKRGKHKIEFILRSYMARLQHSVTDQLTLVFKSA
LIDVSMIHNAIRNGPNKCHVDDCPNHPIWYTEHPCCAIHIDGVIQAFYNPYMVDIHGL
TCPRCTSDEFTYSQTEDSINCHRCYPPTNTSFNTRAKLQIMHDAVCPDKHGAAHDSGA
DAAMTLCIFDKLESSHHRREAASRRGRFIKNQLLPANVHSIRKIKTYLENEYNTPHDF
YIGGGAYIPRTRDADLRVGTSAIEHFSYCSGQTHKHIYIDSRYYVDIDKDRAHCMFLD
RSNPNTNNWKQIHGLHYTLDSRFIYFSPYGAYDGNREQLNFPLLHHDCSGDKIYYSSS
RKYDLPCCDQPRSVLGSYYYHCCEGHAAAMEEIDDAFNAAPGLELWQKAKVNHELYHV
APTPNITTADILTNGELLLPGYETRPPKATDTTLKGIACIQTLSKFNITPENTLLLGA
ARRDGECPFIPHIPGKVTSVDLVKHNNRKGPAFAIDLHDELPPGKYDTIISDLYSATP
EITFPRFLDIIKTNLKEHGHFLFKVTNKFRHNKIIEDIAQYFSYTHIYKAPTNTVTSE
LWVANINHNPKGNTGNILDFDKEYAGRIKTLIDNPHKFKMLFTSPRFIKF"