Overall information
FSDB ID PP1E0013 Type +1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Euplotes octocarinatus macronuclear mRNA for putative nuclear protein kinase (npk 2 gene). 1314 bp mRNA linear INV 15-APR-2005
Resource [1] Tan M, Liang A, Brunen-Nieweler C, Heckmann K. J Eukaryot Microbiol. 2001 Sep-Oct;48(5):575-82.
[2] Tan M, Heckmann K, Brunen-Nieweler C. J Eukaryot Microbiol. 2001 Jan-Feb;48(1):80-7.
Nucleic acid sequence AJ249684
Amino acid sequence
gene 
1..1314
/gene="npk 2"
CDS Click for details
Graphical view

209
TG
AAATAAA
GAAAT
GCTTTACAAAAACCAAGTAGTCCATGTAAGATCTGAAAGAGATATTCTTGTTAAAGC
Stop codons TGA (209),
Slippery sequence
AAATAAA (211 - 217)
Spacer GAAAT (5 nt)
Stimulatory structure
GCTTTACAAAAACCAAGTAGTCCATGTAAGATCTGAAAGAGATATTCTTGTTAAAGC (223 - 279)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model +1 eukaryote frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<