Overall information
FSDB ID PP1E0004 Type +1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Aspergillus nidulans ornithine decarboxylase antizyme (antizyme) mRNA, complete cds. 863 bp mRNA linear PLN 26-SEP-2000
Resource [1] Ivanov IP, Gesteland RF, Atkins JF. Nucleic Acids Res. 2000 Sep 1;28(17):3185-96.
Nucleic acid sequence AF291577
Amino acid sequence
gene 
1..863
/gene="antizyme"
CDS Click for details
Graphical view

107
TGAATGGCTTCCACTACTGCACTACGAACGGGGCCGGAGTACAGTGGTAT
CCCTGA
GGTT
CCCTCAGGGTCGAAGACTGCCAATGCAAGTCCTCCCCT
Stop codons TGA (107),
Slippery sequence
CCCTGA (157 - 162)
Spacer GGTT (4 nt)
Stimulatory structure
CCCTCAGGGTCGAAGACTGCCAATGCAAGTCCTCCCCT (167 - 204)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model +1 eukaryote frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene oaz gene
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<