Overall information
FSDB ID PM1E0009 Type -1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Drosophila melanogaster X BAC RP98-15B10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. 163090 bp DNA linear INV 22-JUN-2002
Resource [1] Gao X, Havecker ER, Baranov PV, Atkins JF, Voytas DF. RNA. 2003 Dec;9(12):1422-30.
Nucleic acid sequence AC023692
Amino acid sequence
gene 
gag-pol
CDS Click for details
Graphical view

129860
TAA
TTTTTTA
GGGGAAAG
TCCCTGCTACCCGTCATCAGACGAAGAGTAGCGGGGA
Stop codons TAA (129860),
Slippery sequence
TTTTTTA (129863 - 129869)
Spacer GGGGAAAG (8 nt)
Stimulatory structure
TCCCTGCTACCCGTCATCAGACGAAGAGTAGCGGGGA (129878 - 129914)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<