Overall information
FSDB ID EM1P0007 Type -1 frameshifting
Data EXPERIMENTAL Kingdom prokaryota
Definition S.dysenteriae insertion sequence IS911. 1250 bp DNA linear BCT 02-MAR-1993
Resource [1] Polard P, Prere MF, Chandler M, Fayet O. J Mol Biol. 1991 Dec 5;222(3):465-77.
[2] Rettberg CC, Prere MF, Gesteland RF, Atkins JF, Fayet O. J Mol Biol. 1999 Mar 12;286(5):1365-78.
[3] Licznar P, Bertrand C, Canal I, Prere MF, Fayet O.FEMS Microbiol Lett. 2003 Jan 28;218(2):231-7.
Nucleic acid sequence X17613
Amino acid sequence
gene 
orfA
CDS Click for details
Graphical view

315
TGAAATATT
AAAAAAG
GCTACC
GCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGC
Stop codons TGA (315),
Slippery sequence
AAAAAAG (324 - 330)
Spacer GCTACC (6 nt)
Stimulatory structure
GCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGC (337 - 393)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<