Overall information
FSDB ID PM1P0003 Type -1 frameshifting
Data PREDICTED Kingdom prokaryota
Definition Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 95 of 251 of the complete chromosome. 10172 bp DNA linear BCT 10-OCT-2003
Resource [1] Baranov PV, Gesteland RF, Atkins JF. Gene. 2002 Mar 20;286(2):187-201.
Nucleic acid sequence AE004187
Amino acid sequence
gene
1341..3419
/gene="VC1054"
CDS Click for details
Graphical view

2756
TAAGCGACAAGAAGTACAAAACAAAGGCGCGGATGG
AAAAAAG
TCTGA
CGCGACATCTGCTACTCCAGCATCGCCG
Stop codons TAA (2756),
Slippery sequence
AAAAAAG (2792 - 2798)
Spacer TCTGA (5 nt)
Stimulatory structure
CGCGACATCTGCTACTCCAGCATCGCCG (2804 - 2831)

Referenced structure by Gene (2002) 286, 187-201
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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Target gene dnaX gene
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions